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OPENSEQ.org

ATP6 - ATPA
UniProt: P0AB98 - P0ABB0
Length: 784
Sequences: 765
Seq/Len: 1.00
I_Prob: 0.00

ATP6 - ATP synthase subunit a
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ATP6
ATPA - ATP synthase subunit alpha
Paralog alert: 0.61 [within 20: 0.32] - ratio of genomes with paralogs
Cluster includes: ATPA ATPB FLII
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
73_G 74_V 1.28 0.00
234_Q 136_V 1.16 0.00
199_S 187_R 1.14 0.00
54_L 502_G 1.12 0.00
217_A 54_S 1.11 0.00
221_I 194_I 1.11 0.00
197_G 481_P 1.08 0.00
112_V 89_K 1.06 0.00
255_I 416_A 1.06 0.00
255_I 264_S 1.01 0.00
255_I 356_E 0.99 0.00
175_T 266_Q 0.99 0.00
143_P 394_R 0.98 0.00
148_N 420_Q 0.98 0.00
2_A 205_I 0.97 0.00
166_I 34_V 0.95 0.00
255_I 422_D 0.91 0.00
193_L 445_S 0.90 0.00
155_L 449_F 0.89 0.00
122_P 213_E 0.88 0.00
177_E 74_V 0.88 0.00
74_K 64_L 0.87 0.00
255_I 47_C 0.87 0.00
262_V 42_H 0.87 0.00
92_D 75_V 0.87 0.00
207_L 404_A 0.86 0.00
106_L 369_N 0.86 0.00
215_M 26_H 0.86 0.00
245_H 272_Q 0.86 0.00
41_I 407_S 0.86 0.00
54_L 460_E 0.86 0.00
74_K 508_K 0.85 0.00
72_P 397_L 0.85 0.00
161_I 241_A 0.85 0.00
77_T 231_S 0.85 0.00
202_S 151_K 0.85 0.00
59_L 499_K 0.84 0.00
54_L 259_I 0.84 0.00
153_M 395_T 0.84 0.00
172_G 259_I 0.84 0.00
244_F 256_A 0.84 0.00
254_F 233_A 0.84 0.00
154_A 88_V 0.84 0.00
206_S 8_I 0.83 0.00
245_H 157_I 0.83 0.00
191_V 286_F 0.83 0.00
158_F 16_I 0.83 0.00
173_G 393_I 0.83 0.00
116_N 397_L 0.82 0.00
203_K 248_Y 0.82 0.00
116_N 454_G 0.81 0.00
248_I 152_A 0.81 0.00
84_G 120_P 0.81 0.00
65_K 159_I 0.81 0.00
266_M 89_K 0.81 0.00
260_T 451_A 0.81 0.00
219_E 141_S 0.81 0.00
228_L 471_L 0.80 0.00
262_V 218_L 0.80 0.00
209_L 368_V 0.80 0.00
56_F 463_K 0.80 0.00
119_D 418_R 0.79 0.00
143_P 403_L 0.79 0.00
73_G 484_Q 0.79 0.00
193_L 82_L 0.79 0.00
86_V 266_Q 0.79 0.00
208_G 380_A 0.79 0.00
72_P 36_D 0.78 0.00
66_K 205_I 0.78 0.00
109_F 50_G 0.78 0.00
246_I 477_R 0.78 0.00
172_G 34_V 0.78 0.00
191_V 218_L 0.78 0.00
103_P 156_M 0.78 0.00
195_L 198_I 0.78 0.00
262_V 471_L 0.78 0.00
248_I 53_I 0.78 0.00
269_E 108_V 0.78 0.00
112_V 72_G 0.77 0.00
220_L 369_N 0.77 0.00
140_R 453_R 0.77 0.00
255_I 364_I 0.77 0.00
153_M 79_Y 0.77 0.00
125_L 204_T 0.77 0.00
201_L 388_K 0.76 0.00
206_S 251_D 0.76 0.00
263_Y 354_F 0.76 0.00
262_V 369_N 0.76 0.00
247_L 250_R 0.76 0.00
65_K 379_G 0.76 0.00
78_A 494_D 0.76 0.00
255_I 471_L 0.76 0.00
251_L 194_I 0.75 0.00
98_S 31_I 0.75 0.00
169_K 38_V 0.75 0.00
63_V 216_G 0.75 0.00
98_S 394_R 0.75 0.00
159_I 459_V 0.74 0.00
54_L 184_I 0.74 0.00
206_S 399_Q 0.74 0.00
59_L 434_K 0.74 0.00
254_F 94_I 0.74 0.00
123_I 340_F 0.74 0.00
101_I 394_R 0.74 0.00
112_V 497_E 0.74 0.00
71_V 213_E 0.74 0.00
203_K 451_A 0.74 0.00
176_K 407_S 0.74 0.00
175_T 368_V 0.74 0.00
206_S 250_R 0.73 0.00
262_V 451_A 0.73 0.00
115_M 398_A 0.73 0.00
135_G 268_V 0.73 0.00
208_G 330_I 0.73 0.00
122_P 225_V 0.73 0.00
151_L 372_I 0.72 0.00
74_K 395_T 0.72 0.00
92_D 41_I 0.72 0.00
241_W 266_Q 0.72 0.00
220_L 364_I 0.72 0.00
122_P 214_E 0.72 0.00
221_I 459_V 0.72 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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