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OPENSEQ.org

RIMP - TRUB
UniProt: P0A8A8 - P60340
Length: 464
Sequences: 844
Seq/Len: 1.87
I_Prob: 0.01

RIMP - Ribosome maturation factor RimP
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIMP
TRUB - tRNA pseudouridine synthase B
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRUB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
82_D 195_A 1.15 0.01
125_I 33_K 1.02 0.01
86_F 213_M 0.97 0.00
40_I 293_G 0.92 0.00
39_Y 248_A 0.91 0.00
103_L 66_S 0.91 0.00
23_L 183_I 0.88 0.00
147_V 54_M 0.88 0.00
136_F 129_L 0.88 0.00
119_A 217_E 0.86 0.00
41_D 194_G 0.86 0.00
65_E 64_K 0.85 0.00
136_F 147_P 0.85 0.00
26_I 203_L 0.85 0.00
150_F 175_S 0.85 0.00
112_K 134_K 0.84 0.00
127_V 160_F 0.82 0.00
115_G 124_S 0.82 0.00
109_N 292_I 0.82 0.00
79_P 64_K 0.81 0.00
116_V 107_Q 0.80 0.00
82_D 61_E 0.79 0.00
94_F 131_Y 0.79 0.00
136_F 296_E 0.78 0.00
38_I 107_Q 0.77 0.00
148_P 26_N 0.77 0.00
50_D 186_D 0.77 0.00
21_F 66_S 0.77 0.00
62_L 247_P 0.77 0.00
100_T 135_K 0.77 0.00
46_I 293_G 0.76 0.00
127_V 59_L 0.76 0.00
106_A 153_I 0.76 0.00
83_R 62_A 0.75 0.00
66_D 33_K 0.75 0.00
141_I 140_A 0.75 0.00
139_S 111_A 0.75 0.00
20_G 149_E 0.75 0.00
102_V 125_M 0.74 0.00
29_I 64_K 0.73 0.00
130_E 256_L 0.73 0.00
72_Y 191_L 0.72 0.00
43_E 263_Y 0.72 0.00
34_S 66_S 0.72 0.00
117_I 255_N 0.72 0.00
17_E 110_A 0.72 0.00
54_V 73_D 0.72 0.00
12_I 107_Q 0.72 0.00
95_V 217_E 0.71 0.00
69_T 203_L 0.71 0.00
51_C 307_R 0.71 0.00
132_K 104_S 0.71 0.00
91_Y 75_R 0.71 0.00
70_V 38_A 0.71 0.00
20_G 91_A 0.71 0.00
140_N 36_Y 0.70 0.00
71_A 65_F 0.70 0.00
81_L 51_A 0.70 0.00
48_V 171_E 0.70 0.00
56_H 95_I 0.70 0.00
92_A 176_K 0.69 0.00
27_E 58_C 0.69 0.00
105_M 292_I 0.69 0.00
64_V 307_R 0.69 0.00
123_E 294_M 0.69 0.00
61_V 214_V 0.69 0.00
20_G 192_G 0.69 0.00
45_G 174_C 0.68 0.00
52_A 212_R 0.68 0.00
127_V 150_A 0.68 0.00
91_Y 201_R 0.67 0.00
25_G 78_V 0.67 0.00
133_D 255_N 0.67 0.00
39_Y 136_L 0.67 0.00
25_G 46_A 0.67 0.00
97_E 24_S 0.66 0.00
84_P 58_C 0.66 0.00
56_H 194_G 0.66 0.00
64_V 61_E 0.66 0.00
48_V 254_V 0.66 0.00
99_V 155_V 0.66 0.00
81_L 168_L 0.66 0.00
10_E 150_A 0.66 0.00
36_L 152_P 0.66 0.00
48_V 206_S 0.66 0.00
126_T 57_I 0.66 0.00
142_Q 293_G 0.66 0.00
88_A 35_I 0.65 0.00
25_G 33_K 0.65 0.00
43_E 256_L 0.65 0.00
18_A 104_S 0.65 0.00
45_G 182_T 0.65 0.00
17_E 258_L 0.65 0.00
120_V 286_G 0.65 0.00
35_T 197_V 0.65 0.00
102_V 145_E 0.65 0.00
127_V 146_V 0.64 0.00
61_V 153_I 0.64 0.00
28_F 184_I 0.64 0.00
43_E 84_Q 0.64 0.00
99_V 77_R 0.64 0.00
98_E 309_V 0.64 0.00
54_V 196_H 0.64 0.00
86_F 14_V 0.64 0.00
82_D 100_P 0.63 0.00
93_R 206_S 0.63 0.00
29_I 197_V 0.63 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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