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OPENSEQ.org

TRPA - YBIB
UniProt: P0A877 - P30177
Length: 588
Sequences: 611
Seq/Len: 1.06
I_Prob: 0.00

TRPA - Tryptophan synthase alpha chain
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRPA
YBIB - Uncharacterized protein YbiB
Paralog alert: 0.33 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: YBIB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
151_I 173_W 1.21 0.00
22_F 161_F 1.16 0.00
161_D 285_S 1.14 0.00
250_K 21_D 1.09 0.00
179_R 154_V 1.06 0.00
219_Q 86_P 1.04 0.00
9_A 38_P 1.00 0.00
54_F 135_I 0.98 0.00
82_F 242_I 0.96 0.00
58_L 178_R 0.94 0.00
119_E 26_R 0.94 0.00
19_F 148_L 0.93 0.00
123_V 164_P 0.92 0.00
70_R 248_E 0.92 0.00
202_E 49_L 0.91 0.00
87_L 246_D 0.91 0.00
58_L 238_R 0.91 0.00
23_V 254_Y 0.91 0.00
158_A 176_G 0.88 0.00
239_K 281_C 0.88 0.00
218_D 150_E 0.88 0.00
58_L 52_K 0.87 0.00
221_K 140_H 0.87 0.00
43_A 111_P 0.86 0.00
140_R 297_A 0.86 0.00
117_Q 27_G 0.86 0.00
112_D 272_E 0.85 0.00
220_V 297_A 0.84 0.00
90_Q 271_P 0.84 0.00
126_V 199_L 0.84 0.00
202_E 44_G 0.84 0.00
250_K 152_Q 0.84 0.00
82_F 278_I 0.84 0.00
182_V 110_F 0.83 0.00
126_V 42_L 0.83 0.00
174_T 149_D 0.83 0.00
156_P 191_F 0.83 0.00
120_K 272_E 0.82 0.00
23_V 226_H 0.82 0.00
63_T 134_G 0.82 0.00
26_G 215_F 0.82 0.00
112_D 234_A 0.82 0.00
123_V 85_I 0.82 0.00
168_S 173_W 0.81 0.00
39_T 265_L 0.81 0.00
149_A 119_E 0.81 0.00
122_G 106_H 0.80 0.00
157_N 86_P 0.80 0.00
100_L 94_Q 0.80 0.00
156_P 58_E 0.80 0.00
100_L 226_H 0.80 0.00
100_L 231_E 0.80 0.00
107_F 25_A 0.79 0.00
30_I 299_C 0.79 0.00
185_A 200_S 0.79 0.00
113_E 258_D 0.79 0.00
121_V 254_Y 0.78 0.00
174_T 207_Y 0.78 0.00
62_P 121_P 0.78 0.00
58_L 103_I 0.78 0.00
148_V 239_C 0.78 0.00
141_Q 200_S 0.78 0.00
174_T 44_G 0.78 0.00
237_I 61_G 0.78 0.00
257_V 276_Q 0.78 0.00
96_P 61_G 0.78 0.00
148_V 153_P 0.78 0.00
54_F 240_P 0.78 0.00
198_A 283_A 0.78 0.00
127_L 268_A 0.78 0.00
81_C 168_Q 0.77 0.00
196_L 243_N 0.77 0.00
124_D 302_A 0.77 0.00
243_Q 57_A 0.77 0.00
87_L 150_E 0.77 0.00
22_F 195_E 0.77 0.00
226_A 102_A 0.77 0.00
68_T 178_R 0.77 0.00
239_K 111_P 0.77 0.00
82_F 161_F 0.76 0.00
85_L 127_E 0.76 0.00
127_L 288_I 0.76 0.00
81_C 261_G 0.76 0.00
265_A 44_G 0.76 0.00
201_K 36_E 0.75 0.00
198_A 12_R 0.75 0.00
150_P 119_E 0.75 0.00
100_L 240_P 0.75 0.00
112_D 36_E 0.75 0.00
109_K 7_I 0.75 0.00
84_M 285_S 0.75 0.00
15_K 23_D 0.75 0.00
58_L 311_D 0.75 0.00
139_F 293_K 0.75 0.00
168_S 140_H 0.74 0.00
119_E 247_R 0.74 0.00
179_R 237_Q 0.74 0.00
33_S 281_C 0.74 0.00
96_P 113_V 0.74 0.00
35_K 246_D 0.73 0.00
48_L 169_L 0.73 0.00
238_V 219_G 0.73 0.00
108_N 41_E 0.73 0.00
85_L 10_I 0.73 0.00
156_P 113_V 0.73 0.00
218_D 308_T 0.73 0.00
126_V 52_K 0.73 0.00
258_F 121_P 0.73 0.00
230_G 137_P 0.73 0.00
201_K 215_F 0.73 0.00
257_V 27_G 0.73 0.00
166_I 200_S 0.73 0.00
219_Q 119_E 0.73 0.00
105_L 302_A 0.73 0.00
149_A 52_K 0.73 0.00
67_A 274_T 0.72 0.00
226_A 141_G 0.72 0.00
93_P 173_W 0.72 0.00
149_A 94_Q 0.72 0.00
148_V 175_M 0.72 0.00
170_G 91_A 0.72 0.00
111_I 105_L 0.72 0.00
181_G 49_L 0.72 0.00
200_L 102_A 0.71 0.00
155_P 293_K 0.71 0.00
76_V 101_L 0.71 0.00
156_P 184_L 0.71 0.00
201_K 124_V 0.71 0.00
45_A 73_L 0.71 0.00
193_L 278_I 0.71 0.00
197_V 154_V 0.71 0.00
129_A 289_P 0.71 0.00
97_I 293_K 0.71 0.00
156_P 61_G 0.71 0.00
223_A 299_C 0.71 0.00
240_I 39_D 0.71 0.00
241_I 70_T 0.70 0.00
123_V 183_T 0.70 0.00
257_V 60_L 0.70 0.00
139_F 195_E 0.70 0.00
31_E 36_E 0.70 0.00
52_I 203_S 0.70 0.00
35_K 21_D 0.70 0.00
120_K 64_E 0.70 0.00
78_P 240_P 0.70 0.00
67_A 183_T 0.70 0.00
127_L 289_P 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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