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OPENSEQ.org

RRF - UPPS
UniProt: P0A805 - P60472
Length: 438
Sequences: 834
Seq/Len: 2.00
I_Prob: 0.03

RRF - Ribosome-recycling factor
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RRF
UPPS - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)
Paralog alert: 0.11 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: UPPS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
109_R 29_G 1.24 0.03
109_R 39_R 1.23 0.03
137_D 68_Y 0.99 0.02
168_I 220_L 0.94 0.01
168_I 110_I 0.88 0.01
163_L 219_V 0.87 0.01
113_L 21_V 0.85 0.01
185_F 82_V 0.85 0.01
64_T 201_I 0.84 0.01
101_P 68_Y 0.84 0.01
33_S 68_Y 0.84 0.01
159_D 229_F 0.82 0.01
169_K 140_N 0.81 0.01
183_M 112_D 0.81 0.01
136_N 93_L 0.81 0.01
182_L 87_E 0.79 0.01
180_A 243_F 0.79 0.01
118_R 243_F 0.78 0.01
131_V 215_Y 0.78 0.01
78_V 102_R 0.78 0.01
23_Q 62_I 0.77 0.01
59_V 57_A 0.77 0.01
86_D 45_A 0.77 0.01
168_I 129_A 0.77 0.01
71_D 192_V 0.76 0.01
114_T 220_L 0.76 0.01
180_A 133_G 0.76 0.01
69_V 53_A 0.75 0.01
152_D 54_V 0.74 0.01
142_L 85_L 0.74 0.01
60_E 116_F 0.72 0.01
113_L 29_G 0.72 0.01
113_L 39_R 0.72 0.01
5_I 158_L 0.72 0.01
38_D 214_L 0.71 0.01
64_T 149_W 0.70 0.01
34_P 107_L 0.70 0.01
154_R 47_A 0.70 0.01
146_K 107_L 0.69 0.01
131_V 225_D 0.69 0.01
134_D 236_F 0.69 0.01
56_S 193_I 0.68 0.01
156_S 192_V 0.68 0.01
169_K 97_V 0.68 0.01
68_N 89_F 0.68 0.01
36_L 95_S 0.68 0.01
14_D 157_Q 0.68 0.01
57_V 87_E 0.67 0.01
10_E 76_N 0.67 0.01
170_K 122_E 0.67 0.01
72_R 151_I 0.67 0.01
52_R 93_L 0.67 0.01
179_E 127_S 0.66 0.01
94_A 150_D 0.66 0.01
75_S 209_I 0.66 0.01
23_Q 183_M 0.66 0.01
154_R 141_I 0.66 0.01
16_C 196_G 0.66 0.01
9_A 236_F 0.66 0.01
24_I 205_L 0.66 0.01
65_L 24_I 0.66 0.01
65_L 100_L 0.65 0.01
90_N 55_S 0.65 0.01
14_D 36_G 0.65 0.01
169_K 37_K 0.65 0.01
43_E 198_E 0.65 0.01
24_I 29_G 0.65 0.01
18_E 240_E 0.65 0.01
25_S 230_E 0.65 0.01
23_Q 229_F 0.65 0.01
123_Q 229_F 0.64 0.01
123_Q 91_W 0.64 0.01
112_D 39_R 0.64 0.01
5_I 34_K 0.64 0.01
29_T 54_V 0.64 0.01
100_V 86_M 0.64 0.01
179_E 204_F 0.64 0.01
20_F 48_K 0.63 0.01
117_V 39_R 0.63 0.01
7_K 62_I 0.63 0.01
64_T 150_D 0.63 0.01
162_K 214_L 0.63 0.01
9_A 121_Q 0.63 0.01
148_I 142_A 0.63 0.01
124_A 236_F 0.62 0.00
96_S 57_A 0.62 0.00
71_D 245_G 0.62 0.00
168_I 214_L 0.62 0.00
35_S 152_V 0.62 0.00
125_R 216_F 0.62 0.00
173_A 173_D 0.62 0.00
126_V 121_Q 0.62 0.00
174_A 158_L 0.61 0.00
117_V 29_G 0.61 0.00
51_L 206_L 0.61 0.00
128_V 55_S 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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