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OPENSEQ.org

RPOA - RS8
UniProt: P0A7Z4 - P0A7W7
Length: 459
Sequences: 824
Seq/Len: 1.81
I_Prob: 0.06

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS8 - 30S ribosomal protein S8
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS8
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
285_T 49_F 1.33 0.06
224_L 129_V 1.27 0.05
148_R 97_A 1.24 0.05
142_M 129_V 1.13 0.04
115_I 45_F 1.12 0.04
85_L 29_S 1.07 0.03
82_L 125_I 1.05 0.03
42_A 83_L 1.03 0.03
180_V 48_D 1.02 0.03
113_A 35_A 1.01 0.02
80_E 97_A 1.00 0.02
192_V 20_A 1.00 0.02
133_L 120_G 0.96 0.02
29_E 50_K 0.95 0.02
172_L 46_I 0.95 0.02
232_V 31_K 0.94 0.02
205_M 97_A 0.94 0.02
257_V 38_N 0.94 0.02
282_V 103_V 0.93 0.02
245_E 126_I 0.93 0.02
205_M 22_K 0.93 0.02
145_K 104_V 0.91 0.02
205_M 85_I 0.91 0.02
280_D 130_A 0.90 0.02
297_K 97_A 0.90 0.02
313_S 111_M 0.90 0.02
139_S 45_F 0.89 0.02
246_K 21_N 0.88 0.02
104_K 70_A 0.88 0.02
153_V 121_L 0.88 0.02
297_K 127_C 0.88 0.02
140_I 19_A 0.88 0.02
31_L 128_Y 0.87 0.01
62_D 61_L 0.86 0.01
217_I 91_E 0.86 0.01
104_K 78_V 0.86 0.01
91_R 104_V 0.85 0.01
110_V 126_I 0.85 0.01
215_E 35_A 0.85 0.01
107_I 61_L 0.85 0.01
182_R 115_A 0.85 0.01
26_V 22_K 0.84 0.01
54_C 97_A 0.84 0.01
90_V 48_D 0.84 0.01
60_E 47_E 0.84 0.01
31_L 105_S 0.84 0.01
150_R 83_L 0.84 0.01
277_Y 39_V 0.84 0.01
130_I 38_N 0.83 0.01
102_L 80_R 0.83 0.01
41_N 11_L 0.82 0.01
181_E 127_C 0.82 0.01
169_G 32_L 0.81 0.01
203_I 17_G 0.81 0.01
278_I 104_V 0.81 0.01
116_T 75_I 0.81 0.01
299_S 72_V 0.81 0.01
80_E 24_A 0.81 0.01
287_V 27_M 0.80 0.01
319_E 78_V 0.79 0.01
191_R 28_P 0.79 0.01
93_Q 31_K 0.79 0.01
72_E 92_L 0.79 0.01
71_K 14_I 0.79 0.01
54_C 74_S 0.79 0.01
146_V 118_Q 0.79 0.01
82_L 3_M 0.78 0.01
70_T 36_I 0.78 0.01
302_E 13_R 0.78 0.01
122_E 48_D 0.78 0.01
71_K 95_V 0.78 0.01
257_V 24_A 0.78 0.01
33_R 117_R 0.78 0.01
111_T 80_R 0.78 0.01
314_L 59_L 0.77 0.01
48_L 78_V 0.77 0.01
272_A 130_A 0.77 0.01
10_K 36_I 0.77 0.01
311_G 99_L 0.77 0.01
173_V 113_D 0.77 0.01
17_E 107_S 0.77 0.01
35_F 51_V 0.76 0.01
306_V 74_S 0.76 0.01
196_T 20_A 0.76 0.01
217_I 10_M 0.76 0.01
224_L 112_T 0.76 0.01
306_V 18_Q 0.76 0.01
50_S 30_S 0.76 0.01
250_D 111_M 0.76 0.01
220_A 10_M 0.76 0.01
85_L 108_K 0.76 0.01
82_L 78_V 0.75 0.01
304_K 127_C 0.75 0.01
210_T 107_S 0.75 0.01
52_P 112_T 0.75 0.01
245_E 56_K 0.75 0.01
126_P 104_V 0.74 0.01
35_F 4_Q 0.74 0.01
226_E 85_I 0.74 0.01
65_L 6_P 0.74 0.01
202_V 55_T 0.74 0.01
131_C 60_E 0.74 0.01
259_D 120_G 0.74 0.01
311_G 60_E 0.74 0.01
188_E 49_F 0.74 0.01
180_V 61_L 0.74 0.01
278_I 4_Q 0.73 0.01
147_Q 120_G 0.73 0.01
64_V 77_R 0.73 0.01
198_L 111_M 0.73 0.01
303_I 34_V 0.73 0.01
71_K 126_I 0.73 0.01
274_A 70_A 0.73 0.01
154_P 25_V 0.73 0.01
224_L 47_E 0.73 0.01
79_L 11_L 0.73 0.01
259_D 107_S 0.73 0.01
311_G 91_E 0.73 0.01
177_Y 48_D 0.73 0.01
187_V 1_M 0.73 0.01
46_I 4_Q 0.73 0.01
135_D 31_K 0.73 0.01
296_G 72_V 0.72 0.01
137_N 78_V 0.72 0.01
302_E 72_V 0.72 0.01
208_N 43_E 0.72 0.01
291_K 40_L 0.72 0.01
96_D 78_V 0.72 0.01
306_V 70_A 0.72 0.01
206_E 52_E 0.72 0.01
180_V 53_G 0.72 0.01
220_A 85_I 0.72 0.01
31_L 125_I 0.71 0.01
146_V 42_E 0.71 0.01
210_T 96_M 0.71 0.01
154_P 92_L 0.71 0.01
21_S 94_K 0.71 0.01
13_L 83_L 0.71 0.01
173_V 47_E 0.71 0.01
213_P 12_T 0.71 0.01
271_K 29_S 0.71 0.01
117_H 85_I 0.71 0.01
3_G 128_Y 0.71 0.01
209_G 117_R 0.71 0.01
146_V 88_R 0.71 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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