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OPENSEQ.org

RPOA - RS3
UniProt: P0A7Z4 - P0A7V3
Length: 562
Sequences: 479
Seq/Len: 0.89
I_Prob: 0.16

RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
RS3 - 30S ribosomal protein S3
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS3
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
217_I 55_I 1.74 0.16
141_S 151_V 1.45 0.07
128_H 10_I 1.42 0.07
181_E 85_E 1.34 0.05
222_T 162_I 1.31 0.05
78_I 6_H 1.27 0.04
35_F 203_F 1.26 0.04
31_L 151_V 1.26 0.04
10_K 158_G 1.24 0.04
217_I 101_I 1.24 0.04
205_M 101_I 1.23 0.04
85_L 151_V 1.23 0.04
115_I 108_K 1.22 0.04
31_L 202_I 1.20 0.04
31_L 13_G 1.20 0.03
16_I 6_H 1.19 0.03
80_E 16_K 1.18 0.03
124_V 154_S 1.16 0.03
137_N 120_I 1.16 0.03
88_L 46_E 1.16 0.03
106_G 66_V 1.13 0.03
266_S 81_G 1.13 0.03
284_R 134_M 1.12 0.03
35_F 198_V 1.11 0.03
274_A 162_I 1.10 0.02
88_L 91_V 1.09 0.02
127_Q 31_D 1.08 0.02
318_L 66_V 1.08 0.02
138_A 66_V 1.07 0.02
319_E 91_V 1.07 0.02
226_E 84_V 1.07 0.02
64_V 106_V 1.06 0.02
108_G 135_K 1.06 0.02
261_E 136_R 1.04 0.02
116_T 176_H 1.04 0.02
143_R 101_I 1.03 0.02
138_A 23_F 1.03 0.02
131_C 187_S 1.02 0.02
182_R 63_S 1.02 0.02
140_I 28_E 1.02 0.02
230_A 8_N 1.01 0.02
210_T 16_K 1.01 0.02
96_D 150_K 1.01 0.02
92_V 126_R 1.01 0.02
149_G 74_G 1.01 0.02
83_L 189_A 1.00 0.02
31_L 101_I 0.99 0.02
280_D 102_N 0.98 0.02
288_E 65_R 0.98 0.02
307_L 176_H 0.98 0.02
65_L 71_A 0.98 0.02
87_G 14_I 0.98 0.02
46_I 5_V 0.98 0.02
175_A 151_V 0.98 0.01
20_S 83_D 0.98 0.01
173_V 24_A 0.97 0.01
148_R 14_I 0.97 0.01
237_V 126_R 0.97 0.01
26_V 198_V 0.97 0.01
306_V 107_R 0.97 0.01
183_I 99_A 0.97 0.01
277_Y 14_I 0.96 0.01
301_T 13_G 0.96 0.01
290_L 72_R 0.96 0.01
141_S 20_S 0.96 0.01
42_A 84_V 0.96 0.01
120_D 76_V 0.96 0.01
60_E 135_K 0.95 0.01
191_R 145_G 0.95 0.01
228_L 28_E 0.95 0.01
245_E 208_L 0.95 0.01
203_I 52_V 0.95 0.01
112_A 162_I 0.94 0.01
171_L 158_G 0.94 0.01
88_L 147_K 0.94 0.01
325_S 212_A 0.94 0.01
129_V 147_K 0.94 0.01
46_I 103_I 0.94 0.01
296_G 189_A 0.94 0.01
172_L 103_I 0.94 0.01
267_A 173_V 0.94 0.01
81_I 43_L 0.94 0.01
20_S 23_F 0.93 0.01
181_E 29_F 0.93 0.01
288_E 6_H 0.93 0.01
288_E 101_I 0.93 0.01
257_V 56_V 0.93 0.01
188_E 47_L 0.93 0.01
291_K 135_K 0.93 0.01
214_E 138_V 0.93 0.01
124_V 6_H 0.92 0.01
257_V 52_V 0.92 0.01
111_T 115_L 0.92 0.01
180_V 192_T 0.92 0.01
158_R 103_I 0.92 0.01
236_D 28_E 0.92 0.01
31_L 207_I 0.92 0.01
91_R 3_Q 0.91 0.01
10_K 103_I 0.91 0.01
110_V 141_A 0.91 0.01
16_I 99_A 0.91 0.01
311_G 115_L 0.90 0.01
132_H 130_F 0.90 0.01
31_L 53_S 0.90 0.01
307_L 124_L 0.90 0.01
126_P 106_V 0.90 0.01
302_E 78_G 0.90 0.01
144_I 149_I 0.89 0.01
113_A 41_Q 0.89 0.01
158_R 150_K 0.89 0.01
64_V 91_V 0.89 0.01
289_L 19_N 0.89 0.01
17_E 39_V 0.89 0.01
299_S 81_G 0.89 0.01
80_E 161_E 0.89 0.01
93_Q 44_T 0.89 0.01
31_L 138_V 0.89 0.01
271_K 203_F 0.89 0.01
138_A 153_V 0.88 0.01
42_A 88_R 0.88 0.01
140_I 61_A 0.88 0.01
102_L 6_H 0.88 0.01
116_T 147_K 0.88 0.01
25_K 23_F 0.88 0.01
124_V 15_V 0.88 0.01
306_V 189_A 0.88 0.01
58_E 154_S 0.88 0.01
306_V 136_R 0.88 0.01
182_R 143_R 0.88 0.01
204_E 196_I 0.88 0.01
188_E 50_A 0.87 0.01
177_Y 167_W 0.87 0.01
162_E 23_F 0.87 0.01
169_G 106_V 0.87 0.01
302_E 145_G 0.87 0.01
93_Q 15_V 0.87 0.01
80_E 151_V 0.86 0.01
228_L 26_T 0.86 0.01
31_L 206_E 0.86 0.01
91_R 93_D 0.86 0.01
25_K 147_K 0.86 0.01
283_Q 162_I 0.86 0.01
171_L 196_I 0.85 0.01
122_E 91_V 0.85 0.01
266_S 74_G 0.85 0.01
294_N 189_A 0.85 0.01
279_G 172_R 0.85 0.01
280_D 60_P 0.85 0.01
153_V 62_K 0.85 0.01
35_F 23_F 0.85 0.01
7_E 29_F 0.85 0.01
55_A 81_G 0.85 0.01
121_V 92_A 0.85 0.01
43_L 79_K 0.85 0.01
303_I 193_Y 0.85 0.01
282_V 215_E 0.85 0.01
271_K 106_V 0.84 0.01
78_I 205_G 0.84 0.01
127_Q 8_N 0.84 0.01
30_P 202_I 0.84 0.01
133_L 162_I 0.84 0.01
224_L 143_R 0.84 0.01
185_Y 88_R 0.84 0.01
220_A 198_V 0.84 0.01
80_E 204_K 0.83 0.01
94_G 55_I 0.83 0.01
31_L 88_R 0.83 0.01
325_S 158_G 0.83 0.01
70_T 83_D 0.83 0.01
75_Q 55_I 0.83 0.01
32_E 205_G 0.83 0.01
128_H 6_H 0.83 0.01
23_H 118_D 0.83 0.01
114_D 198_V 0.83 0.01
263_T 97_V 0.83 0.01
29_E 165_T 0.83 0.01
105_S 29_F 0.83 0.01
156_S 64_I 0.83 0.01
251_P 60_P 0.83 0.01
269_C 174_P 0.83 0.01
37_H 129_M 0.83 0.01
103_N 202_I 0.82 0.01
177_Y 184_Y 0.82 0.01
32_E 81_G 0.82 0.01
197_D 134_M 0.82 0.01
225_A 198_V 0.82 0.01
71_K 55_I 0.82 0.01
87_G 202_I 0.82 0.01
327_A 91_V 0.82 0.01
71_K 103_I 0.82 0.01
213_P 139_Q 0.82 0.01
256_P 98_P 0.82 0.01
185_Y 47_L 0.82 0.01
178_S 172_R 0.81 0.01
100_L 196_I 0.81 0.01
257_V 103_I 0.81 0.01
182_R 23_F 0.81 0.01
35_F 18_W 0.81 0.01
19_V 43_L 0.81 0.01
185_Y 157_L 0.81 0.01
128_H 14_I 0.81 0.01
107_I 210_G 0.81 0.01
204_E 167_W 0.81 0.01
296_G 81_G 0.81 0.01
295_L 193_Y 0.81 0.01
305_D 5_V 0.81 0.01
61_I 105_E 0.80 0.01
133_L 185_N 0.80 0.01
277_Y 126_R 0.80 0.01
143_R 53_S 0.80 0.01
14_V 32_N 0.80 0.01
127_Q 154_S 0.80 0.01
3_G 216_Q 0.80 0.01
108_G 173_V 0.80 0.01
3_G 212_A 0.80 0.01
10_K 18_W 0.80 0.01
100_L 140_N 0.80 0.01
94_G 43_L 0.80 0.01
257_V 158_G 0.80 0.01
62_D 128_V 0.80 0.01
119_G 101_I 0.80 0.01
106_G 139_Q 0.80 0.01
210_T 5_V 0.80 0.01
172_L 29_F 0.79 0.01
288_E 5_V 0.79 0.01
32_E 78_G 0.79 0.01
280_D 83_D 0.79 0.01
185_Y 21_T 0.79 0.01
124_V 55_I 0.79 0.01
64_V 31_D 0.79 0.01
203_I 27_K 0.79 0.01
285_T 193_Y 0.79 0.01
228_L 176_H 0.79 0.01
74_V 19_N 0.79 0.01
36_G 181_D 0.79 0.01
327_A 215_E 0.79 0.01
239_Q 207_I 0.79 0.01
148_R 207_I 0.79 0.01
118_D 101_I 0.79 0.01
57_T 128_V 0.79 0.01
99_I 198_V 0.79 0.01
57_T 123_Q 0.79 0.01
69_S 208_L 0.79 0.01
115_I 30_A 0.79 0.01
280_D 143_R 0.79 0.01
171_L 71_A 0.79 0.01
128_H 147_K 0.79 0.01
243_K 55_I 0.78 0.01
81_I 66_V 0.78 0.01
139_S 91_V 0.78 0.01
46_I 43_L 0.78 0.01
274_A 147_K 0.78 0.01
102_L 91_V 0.78 0.01
90_V 85_E 0.78 0.01
173_V 55_I 0.78 0.01
149_G 206_E 0.78 0.01
17_E 106_V 0.78 0.01
206_E 60_P 0.78 0.01
126_P 74_G 0.78 0.01
20_S 26_T 0.78 0.01
91_R 87_L 0.78 0.01
327_A 212_A 0.78 0.01
232_V 51_S 0.78 0.01
35_F 200_V 0.78 0.01
117_H 198_V 0.78 0.01
66_H 132_R 0.78 0.01
10_K 62_K 0.78 0.01
188_E 42_Y 0.78 0.01
108_G 117_A 0.78 0.01
33_R 145_G 0.77 0.01
39_L 68_I 0.77 0.01
132_H 132_R 0.77 0.01
163_E 75_I 0.77 0.01
226_E 196_I 0.77 0.01
283_Q 126_R 0.77 0.01
78_I 53_S 0.77 0.01
124_V 151_V 0.77 0.01
182_R 101_I 0.77 0.01
181_E 115_L 0.77 0.01
42_A 147_K 0.77 0.01
149_G 78_G 0.77 0.01
324_A 216_Q 0.77 0.01
205_M 52_V 0.77 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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