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OPENSEQ.org
RS3 - 30S ribosomal protein S3
UniProt: P0A7V3 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10902
Length: 233 (211)
Sequences: 1263
Seq/Len: 5.99
RS3
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
53_S 112_D 4.587 1.00
116_V 202_I 4.334 1.00
190_H 195_V 3.694 1.00
46_E 90_V 3.174 1.00
203_F 206_E 2.824 1.00
44_T 114_K 2.578 1.00
111_L 146_A 2.573 1.00
188_E 195_V 2.572 1.00
16_K 19_N 2.471 1.00
120_I 151_V 2.242 1.00
10_I 14_I 2.053 1.00
117_A 187_S 2.029 1.00
136_R 140_N 2.024 1.00
67_T 102_N 2.009 1.00
172_R 203_F 1.907 1.00
118_D 187_S 1.89 1.00
83_D 86_K 1.811 1.00
152_E 165_T 1.795 1.00
120_I 137_A 1.781 1.00
128_V 133_A 1.775 1.00
8_N 16_K 1.751 1.00
114_K 186_T 1.741 1.00
8_N 19_N 1.681 1.00
124_L 130_F 1.644 1.00
114_K 185_N 1.626 1.00
86_K 89_K 1.61 0.99
47_L 76_V 1.599 0.99
43_L 55_I 1.571 0.99
153_V 196_I 1.555 0.99
34_D 38_K 1.538 0.99
70_T 76_V 1.531 0.99
45_K 48_A 1.515 0.99
89_K 93_D 1.513 0.99
43_L 66_V 1.495 0.99
44_T 118_D 1.479 0.99
19_N 54_R 1.448 0.99
28_E 31_D 1.42 0.98
121_T 187_S 1.413 0.98
10_I 15_V 1.407 0.98
38_K 94_I 1.403 0.98
34_D 37_F 1.379 0.98
169_R 172_R 1.377 0.98
119_S 122_S 1.339 0.97
35_S 97_V 1.331 0.97
80_K 136_R 1.328 0.97
114_K 118_D 1.319 0.97
6_H 10_I 1.314 0.97
17_P 21_T 1.306 0.97
43_L 52_V 1.272 0.96
113_A 183_D 1.272 0.96
118_D 122_S 1.271 0.96
12_L 172_R 1.268 0.96
29_F 34_D 1.268 0.96
111_L 141_A 1.259 0.96
42_Y 90_V 1.248 0.96
30_A 34_D 1.24 0.95
42_Y 91_V 1.236 0.95
126_R 162_I 1.234 0.95
129_M 158_G 1.226 0.95
121_T 198_V 1.191 0.94
180_A 203_F 1.177 0.94
152_E 167_W 1.165 0.93
54_R 112_D 1.163 0.93
138_V 170_E 1.144 0.92
21_T 58_E 1.139 0.92
64_I 95_A 1.137 0.92
37_F 41_Q 1.134 0.92
46_E 86_K 1.127 0.91
69_H 104_A 1.123 0.91
124_L 137_A 1.12 0.91
181_D 207_I 1.103 0.90
141_A 202_I 1.099 0.90
15_V 19_N 1.098 0.90
80_K 140_N 1.097 0.90
74_G 105_E 1.086 0.89
154_S 165_T 1.082 0.89
130_F 166_E 1.078 0.89
141_A 149_I 1.073 0.89
38_K 41_Q 1.047 0.87
167_W 172_R 1.046 0.87
52_V 76_V 1.045 0.87
78_G 157_L 1.037 0.86
139_Q 144_L 1.029 0.86
138_V 151_V 1.028 0.86
15_V 207_I 1.028 0.86
24_A 91_V 1.01 0.84
91_V 99_A 1.005 0.84
135_K 158_G 1.005 0.84
43_L 47_L 1.004 0.84
29_F 33_L 1.002 0.84
108_K 144_L 1.002 0.84
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4kiyC111000.093Contact Map0.611
2vqeC10.98711000.109Contact Map0.606
3bbnC10.88841000.144Contact Map0.526
3j20C10.88411000.306Contact Map0.603
3u5cD10.91421000.324Contact Map0.647
3zeyX10.8671000.327Contact Map0.62
4bszA10.9271000.331Contact Map0.377
3j3aD10.91421000.331Contact Map0.491
4bpeC10.90561000.339Contact Map0.585
1wh9A10.38299.80.779Contact Map0.458
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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