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OPENSEQ.org
RS5 - SECY
UniProt: P0A7W1 - P0AGA2
Length: 610
Sequences: 1099
Seq/Len: 1.86
I_Prob: 0.04
RS5 - 30S ribosomal protein S5
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RS5 		SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
151_E 432_A 1.27 0.04
87_G 190_I 1.25 0.03
98_P 81_G 1.23 0.03
130_S 228_F 1.22 0.03
63_A 346_L 1.22 0.03
138_R 246_V 1.16 0.03
36_L 284_I 1.15 0.03
29_R 22_R 1.15 0.03
74_V 95_L 1.14 0.02
64_M 228_F 1.13 0.02
82_Q 411_V 1.13 0.02
35_A 179_T 1.09 0.02
60_I 423_L 1.08 0.02
91_G 132_S 1.07 0.02
120_V 295_G 1.05 0.02
39_V 71_A 1.05 0.02
53_A 136_A 1.05 0.02
153_V 190_I 1.04 0.02
21_V 332_Y 1.02 0.02
122_N 228_F 1.02 0.02
133_P 289_T 1.01 0.02
123_V 43_G 1.01 0.02
26_K 402_G 0.99 0.02
110_A 114_R 0.99 0.01
143_G 123_G 0.97 0.01
29_R 65_N 0.96 0.01
123_V 226_L 0.95 0.01
61_Q 240_G 0.95 0.01
56_V 268_K 0.95 0.01
29_R 87_S 0.95 0.01
105_I 41_I 0.94 0.01
55_E 352_F 0.94 0.01
86_K 226_L 0.94 0.01
94_V 208_E 0.93 0.01
93_R 329_C 0.93 0.01
13_E 33_F 0.93 0.01
125_A 171_L 0.93 0.01
61_Q 411_V 0.93 0.01
114_V 20_K 0.92 0.01
94_V 102_L 0.92 0.01
117_V 317_Y 0.91 0.01
118_A 127_L 0.91 0.01
145_E 363_A 0.91 0.01
74_V 354_P 0.91 0.01
77_N 378_A 0.91 0.01
145_E 158_F 0.91 0.01
153_V 344_D 0.90 0.01
151_E 283_I 0.90 0.01
125_A 320_L 0.90 0.01
124_L 98_V 0.89 0.01
76_L 235_V 0.89 0.01
22_S 92_I 0.89 0.01
143_G 105_I 0.89 0.01
53_A 277_A 0.88 0.01
25_V 286_F 0.88 0.01
122_N 335_L 0.88 0.01
24_T 27_I 0.88 0.01
147_M 357_R 0.88 0.01
14_K 171_L 0.87 0.01
111_M 251_R 0.87 0.01
140_T 353_V 0.87 0.01
97_Q 76_S 0.87 0.01
66_K 44_I 0.87 0.01
50_Y 76_S 0.87 0.01
60_I 268_K 0.86 0.01
78_N 104_E 0.86 0.01
22_S 424_M 0.86 0.01
115_L 72_L 0.86 0.01
60_I 59_T 0.86 0.01
121_H 396_K 0.86 0.01
162_E 190_I 0.85 0.01
118_A 432_A 0.85 0.01
110_A 329_C 0.85 0.01
137_V 383_F 0.84 0.01
29_R 63_M 0.84 0.01
91_G 98_V 0.84 0.01
93_R 385_C 0.84 0.01
122_N 318_V 0.84 0.01
125_A 139_L 0.84 0.01
38_V 195_I 0.84 0.01
137_V 360_E 0.84 0.01
79_G 264_H 0.83 0.01
154_A 71_A 0.83 0.01
127_A 206_T 0.83 0.01
21_V 176_E 0.83 0.01
140_T 76_S 0.83 0.01
24_T 230_V 0.83 0.01
105_I 96_T 0.83 0.01
53_A 342_T 0.83 0.01
71_M 72_L 0.83 0.01
84_P 217_F 0.83 0.01
70_N 159_T 0.82 0.01
46_V 263_T 0.82 0.01
72_I 381_I 0.82 0.01
91_G 82_I 0.82 0.01
153_V 230_V 0.82 0.01
132_N 68_S 0.82 0.01
17_A 189_I 0.82 0.01
29_R 167_G 0.82 0.01
117_V 368_K 0.82 0.01
143_G 284_I 0.82 0.01
115_L 71_A 0.82 0.01
46_V 381_I 0.82 0.01
126_K 362_T 0.82 0.01
93_R 383_F 0.82 0.01
160_S 142_M 0.81 0.01
143_G 353_V 0.81 0.01
113_A 230_V 0.81 0.01
110_A 235_V 0.81 0.01
15_L 22_R 0.81 0.01
151_E 59_T 0.81 0.01
91_G 50_A 0.81 0.01
154_A 65_N 0.81 0.01
68_R 192_F 0.81 0.01
96_M 260_A 0.81 0.01
141_I 53_L 0.80 0.01
85_V 63_M 0.80 0.01
48_F 438_L 0.80 0.01
115_L 389_E 0.80 0.01
73_N 28_G 0.80 0.01
123_V 290_I 0.80 0.01
120_V 434_K 0.80 0.01
12_Q 317_Y 0.80 0.01
37_T 293_W 0.80 0.01
72_I 218_L 0.79 0.01
92_S 160_A 0.79 0.01
22_S 369_V 0.79 0.01
58_A 342_T 0.79 0.01
111_M 190_I 0.79 0.01
32_S 98_V 0.79 0.01
148_N 77_I 0.79 0.01
143_G 136_A 0.79 0.01
123_V 147_G 0.79 0.01
87_G 114_R 0.79 0.01
12_Q 87_S 0.79 0.01
13_E 391_M 0.79 0.01
120_V 208_E 0.79 0.01
141_I 348_K 0.79 0.01
97_Q 432_A 0.78 0.01
120_V 407_L 0.78 0.01
24_T 392_R 0.78 0.01
22_S 310_L 0.78 0.01
48_F 119_Y 0.78 0.01
154_A 268_K 0.78 0.01
133_P 236_F 0.78 0.01
80_T 372_R 0.78 0.01
35_A 21_R 0.78 0.01
8_A 66_M 0.78 0.01
68_R 180_E 0.78 0.01
159_K 17_G 0.78 0.01
85_V 378_A 0.78 0.01
74_V 304_T 0.78 0.01
53_A 239_R 0.78 0.01
53_A 162_V 0.78 0.01
94_V 67_F 0.77 0.01
34_T 130_F 0.77 0.01
143_G 340_R 0.77 0.01
64_M 428_Q 0.77 0.01
96_M 293_W 0.77 0.01
10_E 110_E 0.77 0.01
32_S 256_R 0.77 0.01
16_I 250_K 0.77 0.01
21_V 347_K 0.77 0.01
56_V 281_S 0.77 0.01
89_H 221_L 0.77 0.01
117_V 49_L 0.77 0.01
16_I 130_F 0.76 0.01
150_P 256_R 0.76 0.01
86_K 189_I 0.76 0.01
105_I 176_E 0.76 0.01
94_V 176_E 0.76 0.01
61_Q 425_M 0.76 0.01
10_E 231_T 0.76 0.01
91_G 41_I 0.76 0.01
84_P 255_R 0.76 0.01
42_G 87_S 0.76 0.01
85_V 46_A 0.76 0.01
125_A 283_I 0.76 0.01
115_L 434_K 0.76 0.01
125_A 255_R 0.76 0.01
13_E 11_S 0.76 0.01
76_L 375_L 0.76 0.01
29_R 336_V 0.75 0.01
152_M 265_L 0.75 0.01
101_E 104_E 0.75 0.01
76_L 256_R 0.75 0.01
34_T 433_L 0.75 0.01
160_S 222_L 0.75 0.01
22_S 98_V 0.75 0.01
18_V 227_V 0.75 0.01
82_Q 245_V 0.75 0.01
70_N 353_V 0.75 0.01
105_I 118_Q 0.75 0.01
30_I 283_I 0.75 0.01
63_A 171_L 0.75 0.01
16_I 183_I 0.74 0.01
153_V 148_L 0.74 0.01
63_A 405_S 0.74 0.01
22_S 335_L 0.74 0.01
13_E 342_T 0.74 0.01
54_R 293_W 0.74 0.01
117_V 272_A 0.74 0.01
45_R 60_I 0.74 0.01
41_D 288_A 0.74 0.01
146_N 126_V 0.74 0.01
140_T 248_Y 0.74 0.01
124_L 83_M 0.74 0.01
130_S 72_L 0.74 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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