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OPENSEQ.org

RS4 - SECY
UniProt: P0A7V8 - P0AGA2
Length: 649
Sequences: 610
Seq/Len: 0.95
I_Prob: 0.00

RS4 - 30S ribosomal protein S4
Paralog alert: 0.09 [within 20: 0.02] - ratio of genomes with paralogs
Cluster includes: RS4
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
163_E 190_I 1.34 0.00
10_K 119_Y 1.30 0.00
150_K 326_I 1.30 0.00
70_R 35_I 1.22 0.00
113_E 405_S 1.20 0.00
76_Y 315_P 1.17 0.00
121_K 413_I 1.16 0.00
145_I 178_I 1.11 0.00
67_V 223_V 1.10 0.00
181_T 353_V 1.09 0.00
45_K 71_A 1.07 0.00
101_V 280_A 1.06 0.00
131_N 319_L 1.06 0.00
168_P 282_S 1.05 0.00
148_K 35_I 1.04 0.00
122_A 416_F 1.03 0.00
18_D 65_N 1.03 0.00
96_G 310_L 1.02 0.00
7_P 240_G 1.02 0.00
185_K 378_A 1.02 0.00
145_I 352_F 1.02 0.00
108_G 387_I 1.02 0.00
62_R 59_T 1.01 0.00
174_D 323_S 1.00 0.00
137_V 221_L 0.99 0.00
206_K 75_A 0.98 0.00
150_K 72_L 0.97 0.00
191_L 97_V 0.97 0.00
83_K 58_G 0.96 0.00
47_R 384_I 0.95 0.00
37_A 343_A 0.95 0.00
103_Y 141_N 0.95 0.00
142_V 229_A 0.95 0.00
126_N 234_V 0.94 0.00
143_V 241_Q 0.94 0.00
47_R 364_K 0.94 0.00
103_Y 177_Q 0.94 0.00
203_L 64_F 0.93 0.00
83_K 226_L 0.93 0.00
153_S 284_I 0.93 0.00
174_D 48_V 0.93 0.00
20_F 20_K 0.93 0.00
76_Y 209_Q 0.93 0.00
195_I 51_K 0.92 0.00
77_K 74_R 0.92 0.00
206_K 255_R 0.92 0.00
132_I 387_I 0.92 0.00
47_R 351_A 0.91 0.00
78_E 65_N 0.91 0.00
159_L 405_S 0.91 0.00
119_S 322_A 0.91 0.00
64_I 162_V 0.90 0.00
194_D 352_F 0.90 0.00
112_A 74_R 0.90 0.00
62_R 73_S 0.89 0.00
82_L 228_F 0.89 0.00
15_E 223_V 0.88 0.00
102_V 23_L 0.88 0.00
92_A 290_I 0.88 0.00
140_N 33_F 0.87 0.00
67_V 18_E 0.87 0.00
121_K 95_L 0.87 0.00
137_V 159_T 0.87 0.00
130_V 383_F 0.86 0.00
128_R 237_V 0.86 0.00
172_E 272_A 0.86 0.00
143_V 217_F 0.86 0.00
75_Y 243_R 0.86 0.00
17_T 329_C 0.85 0.00
112_A 190_I 0.85 0.00
129_V 330_F 0.85 0.00
34_I 95_L 0.84 0.00
155_V 257_V 0.84 0.00
10_K 313_G 0.84 0.00
96_G 258_Y 0.84 0.00
179_E 44_I 0.84 0.00
147_E 76_S 0.84 0.00
61_V 370_M 0.84 0.00
105_M 126_V 0.83 0.00
7_P 397_V 0.83 0.00
180_G 333_T 0.83 0.00
8_K 178_I 0.83 0.00
117_L 174_L 0.83 0.00
56_R 337_F 0.83 0.00
10_K 405_S 0.82 0.00
183_K 380_Y 0.82 0.00
5_L 351_A 0.82 0.00
81_R 294_F 0.82 0.00
128_R 256_R 0.82 0.00
10_K 243_R 0.82 0.00
174_D 283_I 0.82 0.00
75_Y 98_V 0.82 0.00
61_V 265_L 0.82 0.00
114_A 10_Q 0.81 0.00
5_L 221_L 0.81 0.00
133_A 363_A 0.81 0.00
145_I 126_V 0.81 0.00
206_K 257_V 0.81 0.00
103_Y 312_P 0.81 0.00
27_A 103_A 0.81 0.00
158_A 83_M 0.81 0.00
173_V 327_F 0.81 0.00
131_N 123_G 0.80 0.00
129_V 413_I 0.80 0.00
31_K 303_L 0.80 0.00
62_R 370_M 0.80 0.00
133_A 39_I 0.80 0.00
45_K 370_M 0.80 0.00
70_R 320_L 0.79 0.00
203_L 80_L 0.79 0.00
80_A 369_V 0.79 0.00
82_L 330_F 0.79 0.00
181_T 125_L 0.79 0.00
155_V 39_I 0.79 0.00
174_D 180_E 0.79 0.00
176_G 134_G 0.78 0.00
142_V 40_P 0.78 0.00
128_R 369_V 0.78 0.00
191_L 181_R 0.78 0.00
135_Y 116_I 0.78 0.00
135_Y 383_F 0.78 0.00
136_Q 414_M 0.78 0.00
37_A 220_L 0.78 0.00
45_K 243_R 0.78 0.00
151_K 320_L 0.78 0.00
177_K 129_I 0.78 0.00
167_K 366_I 0.78 0.00
158_A 380_Y 0.78 0.00
198_H 443_R 0.78 0.00
190_D 65_N 0.77 0.00
76_Y 265_L 0.77 0.00
85_N 433_L 0.77 0.00
12_S 91_I 0.77 0.00
143_V 246_V 0.77 0.00
176_G 324_A 0.77 0.00
196_N 349_S 0.77 0.00
76_Y 76_S 0.77 0.00
45_K 206_T 0.76 0.00
52_G 169_M 0.76 0.00
139_P 39_I 0.76 0.00
148_K 44_I 0.76 0.00
184_R 38_F 0.76 0.00
109_A 373_L 0.76 0.00
141_D 348_K 0.76 0.00
206_K 30_L 0.76 0.00
198_H 250_K 0.76 0.00
52_G 400_Y 0.76 0.00
100_N 243_R 0.76 0.00
159_L 251_R 0.76 0.00
172_E 59_T 0.76 0.00
110_T 165_V 0.76 0.00
124_M 251_R 0.76 0.00
101_V 207_I 0.76 0.00
37_A 216_H 0.75 0.00
45_K 220_L 0.75 0.00
203_L 335_L 0.75 0.00
110_T 37_S 0.75 0.00
143_V 383_F 0.75 0.00
141_D 234_V 0.75 0.00
166_E 329_C 0.75 0.00
190_D 229_A 0.75 0.00
168_P 72_L 0.75 0.00
187_E 320_L 0.75 0.00
73_R 27_I 0.75 0.00
53_V 348_K 0.74 0.00
159_L 420_V 0.74 0.00
162_A 197_A 0.74 0.00
128_R 433_L 0.74 0.00
173_V 49_L 0.74 0.00
169_T 68_S 0.74 0.00
108_G 291_A 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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