May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL35 - SYFB
UniProt: P0A7Q1 - P07395
Length: 860
Sequences: 716
Seq/Len: 0.83
I_Prob: 0.00

RL35 - 50S ribosomal protein L35
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL35
SYFB - Phenylalanine--tRNA ligase beta subunit
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SYFB
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_K 409_R 0.99 0.00
24_H 77_I 0.97 0.00
30_R 474_I 0.97 0.00
59_I 143_I 0.94 0.00
54_D 645_H 0.92 0.00
18_G 621_L 0.90 0.00
59_I 758_I 0.87 0.00
11_A 704_P 0.84 0.00
14_F 613_D 0.83 0.00
8_R 706_N 0.83 0.00
28_N 441_K 0.82 0.00
64_Y 715_A 0.81 0.00
43_H 354_T 0.81 0.00
2_P 237_K 0.81 0.00
62_L 700_I 0.79 0.00
32_I 158_I 0.78 0.00
30_R 216_Y 0.77 0.00
20_G 265_H 0.76 0.00
15_K 351_G 0.76 0.00
9_G 462_V 0.76 0.00
62_L 404_A 0.75 0.00
33_L 535_S 0.75 0.00
53_G 539_V 0.75 0.00
18_G 712_V 0.75 0.00
46_P 356_A 0.74 0.00
18_G 150_Y 0.74 0.00
18_G 355_D 0.74 0.00
45_R 544_M 0.74 0.00
48_A 325_N 0.74 0.00
38_T 754_K 0.73 0.00
62_L 136_E 0.73 0.00
15_K 49_E 0.73 0.00
43_H 10_E 0.73 0.00
7_V 478_P 0.72 0.00
19_K 51_V 0.72 0.00
10_A 768_T 0.72 0.00
7_V 531_L 0.71 0.00
54_D 646_P 0.71 0.00
29_L 549_W 0.71 0.00
60_A 388_A 0.71 0.00
19_K 355_D 0.71 0.00
19_K 432_R 0.71 0.00
38_T 32_V 0.71 0.00
9_G 510_V 0.70 0.00
33_L 568_R 0.70 0.00
52_K 73_R 0.70 0.00
41_K 412_K 0.70 0.00
54_D 159_E 0.70 0.00
20_G 290_L 0.70 0.00
50_V 627_L 0.70 0.00
38_T 155_D 0.70 0.00
22_F 25_I 0.69 0.00
18_G 289_L 0.69 0.00
46_P 362_R 0.69 0.00
29_L 230_T 0.69 0.00
60_A 34_G 0.69 0.00
53_G 260_L 0.69 0.00
65_A 735_V 0.68 0.00
10_A 335_C 0.68 0.00
8_R 619_G 0.68 0.00
62_L 149_E 0.68 0.00
18_G 35_V 0.68 0.00
58_V 556_V 0.68 0.00
62_L 403_R 0.68 0.00
51_S 629_G 0.68 0.00
19_K 407_T 0.68 0.00
22_F 591_M 0.68 0.00
59_I 294_E 0.67 0.00
2_P 728_K 0.67 0.00
15_K 300_D 0.67 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.1508 seconds.