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OPENSEQ.org

RL29 - SECY
UniProt: P0A7M6 - P0AGA2
Length: 506
Sequences: 880
Seq/Len: 1.77
I_Prob: 0.01

RL29 - 50S ribosomal protein L29
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL29
SECY - Protein translocase subunit SecY
Paralog alert: 0.10 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECY
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
18_L 23_L 1.21 0.01
10_S 283_I 1.19 0.01
34_S 246_V 1.14 0.01
60_K 325_I 1.13 0.01
44_K 228_F 1.10 0.01
45_Q 44_I 1.09 0.01
12_E 327_F 1.07 0.01
47_R 288_A 1.07 0.01
54_K 264_H 1.06 0.01
34_S 347_K 1.01 0.01
5_E 387_I 1.00 0.01
36_Q 117_S 0.99 0.01
9_K 419_Q 0.97 0.01
59_E 44_I 0.96 0.01
39_Q 77_I 0.96 0.01
26_F 107_K 0.95 0.01
6_L 148_L 0.95 0.01
38_Q 293_W 0.95 0.01
47_R 66_M 0.95 0.01
10_S 162_V 0.94 0.01
20_N 382_T 0.94 0.01
40_S 395_M 0.94 0.01
7_R 55_Q 0.93 0.01
47_R 181_R 0.91 0.01
42_L 431_S 0.90 0.01
50_V 27_I 0.90 0.01
6_L 199_L 0.90 0.01
48_R 129_I 0.89 0.01
49_D 290_I 0.89 0.01
56_L 35_I 0.89 0.01
33_A 114_R 0.89 0.01
12_E 289_T 0.88 0.01
10_S 290_I 0.88 0.01
9_K 424_M 0.88 0.01
53_V 175_G 0.86 0.00
18_L 352_F 0.85 0.00
44_K 329_C 0.85 0.00
4_K 199_L 0.84 0.00
23_R 333_T 0.84 0.00
22_L 368_K 0.83 0.00
32_A 39_I 0.83 0.00
58_N 349_S 0.83 0.00
58_N 65_N 0.83 0.00
40_S 370_M 0.83 0.00
22_L 26_V 0.82 0.00
61_A 229_A 0.82 0.00
53_V 420_V 0.82 0.00
4_K 197_A 0.81 0.00
31_Q 290_I 0.81 0.00
44_K 61_I 0.81 0.00
15_N 221_L 0.80 0.00
44_K 344_D 0.80 0.00
44_K 24_L 0.80 0.00
60_K 374_T 0.80 0.00
24_E 282_S 0.80 0.00
18_L 43_G 0.80 0.00
3_A 134_G 0.80 0.00
18_L 337_F 0.79 0.00
47_R 347_K 0.79 0.00
18_L 125_L 0.79 0.00
6_L 316_L 0.79 0.00
59_E 40_P 0.79 0.00
60_K 424_M 0.79 0.00
57_L 78_F 0.79 0.00
13_E 421_Q 0.78 0.00
60_K 209_Q 0.78 0.00
57_L 407_L 0.78 0.00
49_D 231_T 0.78 0.00
12_E 151_N 0.77 0.00
58_N 420_V 0.77 0.00
9_K 92_I 0.77 0.00
30_M 65_N 0.77 0.00
50_V 353_V 0.77 0.00
8_E 199_L 0.77 0.00
13_E 207_I 0.77 0.00
53_V 234_V 0.76 0.00
61_A 225_V 0.76 0.00
38_Q 26_V 0.76 0.00
20_N 128_A 0.76 0.00
5_E 264_H 0.76 0.00
45_Q 225_V 0.76 0.00
16_T 319_L 0.76 0.00
47_R 82_I 0.76 0.00
53_V 258_Y 0.76 0.00
21_L 289_T 0.75 0.00
33_A 128_A 0.75 0.00
35_G 191_I 0.75 0.00
44_K 60_I 0.75 0.00
18_L 161_V 0.74 0.00
49_D 108_E 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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