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RL20 - SYFA
UniProt: P0A7L3 - P08312
Length: 445
Sequences: 613
Seq/Len: 1.38
I_Prob: 0.00

RL20 - 50S ribosomal protein L20
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL20
SYFA - Phenylalanine--tRNA ligase alpha subunit
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SYFA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3pcoACBDContact Map
1b7yABContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
109_L 27_V 1.21 0.00
2_A 64_K 1.19 0.00
93_K 61_N 1.17 0.00
98_I 282_N 1.17 0.00
37_Q 179_K 1.15 0.00
14_H 205_M 1.12 0.00
33_R 207_H 1.09 0.00
6_R 204_P 1.08 0.00
10_A 290_Y 1.08 0.00
19_K 257_V 1.07 0.00
80_I 299_M 1.05 0.00
104_V 17_Q 1.03 0.00
116_A 23_A 1.02 0.00
49_D 246_S 1.02 0.00
12_A 141_D 1.02 0.00
51_R 67_V 1.01 0.00
78_K 78_L 1.01 0.00
91_D 1_M 0.99 0.00
91_D 20_D 0.98 0.00
38_A 198_Y 0.98 0.00
93_K 313_R 0.98 0.00
6_R 198_Y 0.98 0.00
51_R 71_L 0.97 0.00
110_V 47_E 0.97 0.00
56_Q 214_V 0.95 0.00
88_V 58_A 0.94 0.00
14_H 204_P 0.94 0.00
90_I 209_M 0.94 0.00
7_G 58_A 0.94 0.00
36_F 123_L 0.93 0.00
24_Y 295_F 0.93 0.00
97_D 58_A 0.93 0.00
16_K 243_F 0.92 0.00
6_R 153_A 0.91 0.00
25_Y 148_H 0.91 0.00
19_K 35_K 0.91 0.00
51_R 103_N 0.89 0.00
113_A 95_S 0.88 0.00
88_V 309_V 0.87 0.00
27_A 141_D 0.87 0.00
53_R 216_T 0.87 0.00
89_E 187_I 0.87 0.00
111_E 73_A 0.87 0.00
20_Q 17_Q 0.85 0.00
98_I 182_Q 0.85 0.00
98_I 43_T 0.85 0.00
107_T 84_N 0.85 0.00
83_L 95_S 0.85 0.00
16_K 106_L 0.84 0.00
7_G 241_I 0.84 0.00
33_R 204_P 0.84 0.00
14_H 230_F 0.84 0.00
115_A 4_L 0.84 0.00
94_I 71_L 0.84 0.00
10_A 204_P 0.84 0.00
16_K 86_R 0.83 0.00
81_N 7_L 0.83 0.00
40_I 325_Q 0.83 0.00
115_A 232_R 0.83 0.00
63_A 299_M 0.82 0.00
115_A 114_D 0.82 0.00
29_S 297_M 0.82 0.00
79_F 169_Q 0.82 0.00
17_I 19_S 0.81 0.00
96_A 242_R 0.81 0.00
11_R 214_V 0.81 0.00
107_T 88_A 0.81 0.00
39_V 304_M 0.81 0.00
25_Y 126_T 0.81 0.00
88_V 16_S 0.80 0.00
30_R 293_F 0.80 0.00
25_Y 109_V 0.80 0.00
68_A 218_I 0.80 0.00
103_K 221_T 0.80 0.00
114_K 80_S 0.80 0.00
93_K 97_P 0.79 0.00
107_T 67_V 0.79 0.00
49_D 251_T 0.79 0.00
49_D 254_S 0.79 0.00
98_I 113_I 0.78 0.00
39_V 325_Q 0.78 0.00
91_D 196_N 0.78 0.00
18_L 219_S 0.78 0.00
43_G 119_F 0.78 0.00
41_K 188_I 0.78 0.00
5_K 202_H 0.78 0.00
72_N 109_V 0.78 0.00
110_V 160_F 0.77 0.00
80_I 129_T 0.77 0.00
18_L 60_I 0.77 0.00
116_A 184_P 0.76 0.00
51_R 251_T 0.76 0.00
51_R 254_S 0.76 0.00
109_L 225_G 0.76 0.00
11_R 31_Y 0.76 0.00
111_E 309_V 0.75 0.00
111_E 84_N 0.75 0.00
110_V 72_N 0.75 0.00
109_L 303_T 0.75 0.00
6_R 272_C 0.74 0.00
20_Q 61_N 0.74 0.00
112_K 185_I 0.74 0.00
108_A 297_M 0.74 0.00
4_V 202_H 0.74 0.00
103_K 129_T 0.74 0.00
52_Q 240_Q 0.74 0.00
13_R 318_N 0.74 0.00
111_E 51_E 0.73 0.00
98_I 188_I 0.73 0.00
75_S 327_K 0.73 0.00
14_H 34_K 0.73 0.00
51_R 231_L 0.73 0.00
21_A 303_T 0.72 0.00
75_S 110_T 0.72 0.00
77_S 159_W 0.72 0.00
40_I 138_H 0.72 0.00
37_Q 318_N 0.72 0.00
108_A 175_I 0.71 0.00
52_Q 214_V 0.71 0.00
115_A 76_A 0.71 0.00
17_I 46_R 0.71 0.00
16_K 307_Y 0.71 0.00
115_A 85_A 0.71 0.00
69_A 259_V 0.71 0.00
88_V 289_V 0.71 0.00
59_Q 26_N 0.70 0.00
19_K 177_T 0.70 0.00
115_A 14_A 0.70 0.00
112_K 28_R 0.70 0.00
30_R 291_S 0.70 0.00
85_K 220_F 0.70 0.00
103_K 64_K 0.70 0.00
52_Q 95_S 0.70 0.00
100_V 242_R 0.70 0.00
4_V 204_P 0.70 0.00
10_A 11_A 0.70 0.00
45_Y 242_R 0.70 0.00
80_I 219_S 0.70 0.00
87_S 232_R 0.70 0.00
55_R 224_K 0.70 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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