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OPENSEQ.org

RL1 - SECE
UniProt: P0A7L0 - P0AG96
Length: 361
Sequences: 226
Seq/Len: 0.64
I_Prob: 0.00

RL1 - 50S ribosomal protein L1
Paralog alert: 0.04 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL1
SECE - Preprotein translocase subunit SecE
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: SECE
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
104_I 30_I 1.54 0.00
224_V 111_L 1.46 0.00
224_V 120_S 1.44 0.00
142_V 100_V 1.35 0.00
162_R 88_Q 1.32 0.00
177_K 88_Q 1.31 0.00
73_V 59_A 1.21 0.00
72_S 64_K 1.18 0.00
200_K 83_I 1.18 0.00
199_A 47_A 1.17 0.00
229_L 40_M 1.17 0.00
213_S 42_P 1.16 0.00
129_Q 115_L 1.16 0.00
32_E 124_G 1.15 0.00
110_N 41_L 1.15 0.00
30_L 76_R 1.15 0.00
36_A 105_S 1.14 0.00
181_D 115_L 1.13 0.00
148_N 125_L 1.10 0.00
62_A 29_A 1.10 0.00
50_I 104_M 1.09 0.00
22_D 56_G 1.08 0.00
5_T 102_A 1.08 0.00
79_T 58_V 1.08 0.00
71_R 101_T 1.07 0.00
204_A 58_V 1.07 0.00
168_N 19_W 1.06 0.00
10_V 119_V 1.05 0.00
47_N 62_T 1.04 0.00
42_V 16_A 1.04 0.00
98_E 15_E 1.03 0.00
19_K 52_I 1.02 0.00
197_K 33_N 1.02 0.00
39_V 81_K 0.99 0.00
224_V 20_V 0.99 0.00
165_N 18_K 0.98 0.00
165_N 101_T 0.98 0.00
224_V 51_L 0.98 0.00
28_A 22_V 0.97 0.00
52_A 47_A 0.97 0.00
15_V 66_K 0.97 0.00
98_E 5_T 0.97 0.00
46_V 11_G 0.96 0.00
98_E 37_R 0.96 0.00
186_K 74_E 0.96 0.00
204_A 56_G 0.95 0.00
30_L 62_T 0.95 0.00
227_A 105_S 0.95 0.00
65_L 81_K 0.95 0.00
162_R 76_R 0.95 0.00
227_A 104_M 0.94 0.00
151_E 20_V 0.94 0.00
63_T 100_V 0.94 0.00
224_V 22_V 0.94 0.00
227_A 106_L 0.94 0.00
73_V 29_A 0.93 0.00
185_L 73_R 0.92 0.00
222_V 25_L 0.92 0.00
125_G 87_R 0.92 0.00
191_A 92_H 0.91 0.00
182_A 50_I 0.91 0.00
123_V 76_R 0.91 0.00
195_A 116_V 0.91 0.00
163_Y 17_M 0.91 0.00
52_A 81_K 0.91 0.00
15_V 107_I 0.90 0.00
203_Q 17_M 0.90 0.00
181_D 121_F 0.90 0.00
50_I 70_A 0.90 0.00
16_D 32_G 0.89 0.00
62_A 2_S 0.88 0.00
199_A 114_I 0.88 0.00
146_T 96_I 0.88 0.00
43_D 74_E 0.88 0.00
14_K 104_M 0.88 0.00
24_N 123_T 0.88 0.00
174_T 66_K 0.88 0.00
50_I 11_G 0.87 0.00
203_Q 103_V 0.87 0.00
216_T 24_A 0.87 0.00
12_R 81_K 0.87 0.00
94_L 24_A 0.87 0.00
24_N 102_A 0.86 0.00
195_A 71_F 0.86 0.00
197_K 19_W 0.86 0.00
158_A 73_R 0.86 0.00
52_A 54_A 0.86 0.00
203_Q 66_K 0.86 0.00
29_L 72_A 0.86 0.00
27_I 22_V 0.85 0.00
178_V 27_L 0.85 0.00
72_S 57_G 0.85 0.00
151_E 91_L 0.85 0.00
181_D 52_I 0.85 0.00
5_T 91_L 0.85 0.00
35_T 72_A 0.84 0.00
184_K 114_I 0.84 0.00
93_E 64_K 0.84 0.00
195_A 117_R 0.84 0.00
220_A 1_M 0.84 0.00
228_G 26_L 0.84 0.00
9_R 4_N 0.83 0.00
214_I 120_S 0.83 0.00
23_I 119_V 0.83 0.00
134_R 108_L 0.83 0.00
23_I 37_R 0.83 0.00
30_L 33_N 0.83 0.00
175_I 57_G 0.83 0.00
114_V 80_R 0.82 0.00
35_T 106_L 0.82 0.00
117_S 44_R 0.82 0.00
65_L 71_F 0.82 0.00
224_V 75_A 0.82 0.00
158_A 105_S 0.82 0.00
220_A 79_V 0.82 0.00
67_H 126_R 0.82 0.00
202_T 37_R 0.81 0.00
179_D 105_S 0.81 0.00
213_S 12_R 0.81 0.00
105_K 79_V 0.81 0.00
82_A 2_S 0.81 0.00
210_K 20_V 0.81 0.00
31_K 71_F 0.81 0.00
4_L 37_R 0.81 0.00
63_T 62_T 0.81 0.00
32_E 18_K 0.81 0.00
63_T 123_T 0.81 0.00
46_V 115_L 0.81 0.00
222_V 105_S 0.81 0.00
173_T 19_W 0.80 0.00
196_L 74_E 0.80 0.00
50_I 52_I 0.80 0.00
44_V 94_T 0.80 0.00
30_L 1_M 0.80 0.00
187_E 14_L 0.80 0.00
189_L 71_F 0.80 0.00
163_Y 71_F 0.80 0.00
98_E 63_T 0.80 0.00
7_R 4_N 0.79 0.00
193_L 75_A 0.79 0.00
98_E 99_A 0.79 0.00
30_L 42_P 0.79 0.00
9_R 56_G 0.79 0.00
53_R 80_R 0.79 0.00
171_I 24_A 0.79 0.00
185_L 90_T 0.79 0.00
208_Y 21_V 0.79 0.00
173_T 71_F 0.79 0.00
12_R 53_A 0.79 0.00
184_K 63_T 0.78 0.00
15_V 23_V 0.78 0.00
24_N 67_A 0.78 0.00
194_V 36_Y 0.78 0.00
31_K 81_K 0.78 0.00
207_V 109_W 0.77 0.00
98_E 36_Y 0.77 0.00
83_N 113_G 0.77 0.00
142_V 34_Y 0.77 0.00
209_I 24_A 0.77 0.00
148_N 43_L 0.77 0.00
150_A 74_E 0.77 0.00
93_E 91_L 0.77 0.00
142_V 14_L 0.77 0.00
82_A 74_E 0.77 0.00
216_T 82_V 0.77 0.00
59_V 87_R 0.77 0.00
178_V 122_I 0.76 0.00
231_A 111_L 0.76 0.00
63_T 75_A 0.76 0.00
52_A 104_M 0.76 0.00
52_A 118_L 0.76 0.00
18_T 86_T 0.76 0.00
174_T 71_F 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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