May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

RL19 - TRMD
UniProt: P0A7K6 - P0A873
Length: 370
Sequences: 1004
Seq/Len: 2.81
I_Prob: 0.01

RL19 - 50S ribosomal protein L19
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL19
TRMD - tRNA (guanine-N(1)-)-methyltransferase
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: TRMD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
63_K 162_H 1.03 0.01
76_T 133_I 0.99 0.01
109_R 118_I 0.94 0.01
43_F 200_N 0.91 0.01
38_K 183_R 0.90 0.01
11_E 183_R 0.83 0.01
26_V 40_D 0.81 0.01
63_K 114_R 0.81 0.01
64_I 54_Y 0.80 0.01
98_Y 70_A 0.78 0.01
12_Q 150_D 0.76 0.00
52_N 139_S 0.76 0.00
18_P 140_G 0.75 0.00
40_L 24_R 0.75 0.00
100_L 160_L 0.74 0.00
88_R 150_D 0.73 0.00
75_Q 20_G 0.73 0.00
32_V 58_P 0.72 0.00
96_K 148_L 0.72 0.00
58_A 74_A 0.71 0.00
85_S 41_F 0.71 0.00
63_K 171_F 0.71 0.00
27_E 189_G 0.71 0.00
102_E 133_I 0.68 0.00
57_S 20_G 0.68 0.00
37_K 82_A 0.68 0.00
84_I 7_S 0.66 0.00
31_W 21_V 0.66 0.00
63_K 142_E 0.66 0.00
19_S 200_N 0.65 0.00
50_I 54_Y 0.65 0.00
76_T 123_I 0.65 0.00
75_Q 17_T 0.63 0.00
10_Q 41_F 0.63 0.00
60_T 132_S 0.62 0.00
14_K 194_P 0.62 0.00
16_D 161_G 0.62 0.00
103_R 40_D 0.61 0.00
43_F 63_M 0.60 0.00
84_I 110_L 0.60 0.00
82_D 45_R 0.60 0.00
31_W 218_L 0.60 0.00
78_S 123_I 0.59 0.00
84_I 11_E 0.58 0.00
109_R 161_G 0.58 0.00
86_V 97_A 0.58 0.00
63_K 140_G 0.58 0.00
13_M 162_H 0.58 0.00
80_V 187_L 0.57 0.00
19_S 88_S 0.57 0.00
111_K 115_Y 0.57 0.00
32_V 23_G 0.57 0.00
103_R 13_F 0.57 0.00
111_K 3_I 0.57 0.00
110_I 58_P 0.57 0.00
107_A 3_I 0.56 0.00
66_N 120_E 0.56 0.00
47_V 66_P 0.56 0.00
109_R 86_Y 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.2227 seconds.