May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

PYRH - RSEP
UniProt: P0A7E9 - P0AEH1
Length: 691
Sequences: 694
Seq/Len: 1.01
I_Prob: 0.00

PYRH - Uridylate kinase
Paralog alert: 0.90 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: PYRH
RSEP - Regulator of sigma E protease
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RSEP
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
41_I 93_S 1.39 0.00
184_Y 272_L 1.16 0.00
195_K 243_G 1.11 0.00
230_V 217_P 1.11 0.00
156_I 59_Y 1.08 0.00
51_V 275_E 1.07 0.00
75_V 389_N 1.07 0.00
36_R 29_V 1.04 0.00
208_A 396_F 1.03 0.00
33_I 338_M 1.02 0.00
202_L 369_G 1.02 0.00
136_A 13_V 1.01 0.00
193_L 251_G 1.00 0.00
41_I 13_V 1.00 0.00
113_V 323_P 1.00 0.00
131_V 48_L 1.00 0.00
188_T 110_I 1.00 0.00
160_V 17_V 0.99 0.00
50_Q 247_V 0.97 0.00
52_G 358_L 0.95 0.00
164_A 265_R 0.95 0.00
33_I 268_P 0.95 0.00
50_Q 233_S 0.94 0.00
164_A 436_V 0.94 0.00
184_Y 342_V 0.94 0.00
76_G 421_E 0.94 0.00
170_V 176_E 0.93 0.00
188_T 274_L 0.93 0.00
41_I 102_A 0.93 0.00
236_G 59_Y 0.90 0.00
188_T 235_A 0.90 0.00
33_I 391_G 0.89 0.00
188_T 416_G 0.89 0.00
144_T 62_A 0.88 0.00
12_I 376_V 0.88 0.00
189_Y 274_L 0.88 0.00
195_K 237_K 0.88 0.00
200_M 70_V 0.87 0.00
236_G 30_A 0.87 0.00
171_F 414_I 0.87 0.00
26_G 348_L 0.87 0.00
12_I 371_T 0.87 0.00
219_N 111_F 0.87 0.00
144_T 31_R 0.87 0.00
97_R 268_P 0.86 0.00
148_A 442_A 0.86 0.00
161_V 391_G 0.86 0.00
43_E 106_V 0.86 0.00
212_K 15_L 0.86 0.00
88_G 414_I 0.86 0.00
212_K 373_E 0.85 0.00
61_F 39_R 0.85 0.00
215_I 342_V 0.84 0.00
221_N 56_G 0.84 0.00
192_V 389_N 0.84 0.00
164_A 38_E 0.84 0.00
210_D 246_I 0.84 0.00
10_K 119_V 0.83 0.00
40_E 96_Q 0.83 0.00
51_V 64_I 0.83 0.00
43_E 277_E 0.83 0.00
36_R 99_A 0.82 0.00
9_Y 52_T 0.82 0.00
165_T 62_A 0.82 0.00
184_Y 381_P 0.82 0.00
188_T 9_A 0.82 0.00
95_L 231_P 0.81 0.00
173_A 54_K 0.81 0.00
9_Y 35_V 0.81 0.00
193_L 408_F 0.81 0.00
86_M 429_R 0.80 0.00
219_N 296_G 0.80 0.00
97_R 300_G 0.80 0.00
212_K 297_K 0.80 0.00
230_V 72_M 0.80 0.00
187_L 111_F 0.80 0.00
110_L 386_I 0.80 0.00
229_V 370_M 0.79 0.00
44_L 348_L 0.79 0.00
158_A 295_N 0.79 0.00
131_V 444_F 0.79 0.00
142_F 19_I 0.79 0.00
25_E 330_A 0.79 0.00
187_L 89_F 0.79 0.00
47_L 274_L 0.79 0.00
158_A 444_F 0.79 0.00
227_R 447_F 0.78 0.00
203_A 77_A 0.78 0.00
189_Y 92_K 0.78 0.00
160_V 423_V 0.78 0.00
7_P 48_L 0.78 0.00
88_G 132_G 0.78 0.00
198_K 81_V 0.78 0.00
9_Y 430_I 0.77 0.00
234_K 59_Y 0.77 0.00
226_L 27_F 0.77 0.00
55_I 416_G 0.77 0.00
230_V 197_L 0.77 0.00
22_Q 382_F 0.77 0.00
178_D 122_I 0.77 0.00
159_D 15_L 0.77 0.00
216_R 13_V 0.77 0.00
147_S 46_K 0.77 0.00
151_L 387_S 0.76 0.00
219_N 444_F 0.76 0.00
237_T 445_N 0.76 0.00
93_D 30_A 0.76 0.00
162_L 302_V 0.76 0.00
172_T 440_G 0.76 0.00
213_L 396_F 0.76 0.00
172_T 48_L 0.76 0.00
196_E 386_I 0.75 0.00
239_I 92_K 0.75 0.00
69_A 358_L 0.75 0.00
187_L 242_A 0.75 0.00
41_I 343_S 0.75 0.00
159_D 322_G 0.75 0.00
13_L 35_V 0.75 0.00
131_V 414_I 0.75 0.00
41_I 339_K 0.74 0.00
162_L 37_V 0.74 0.00
230_V 226_L 0.74 0.00
162_L 327_I 0.74 0.00
27_F 423_V 0.74 0.00
210_D 96_Q 0.74 0.00
32_S 233_S 0.74 0.00
142_F 338_M 0.74 0.00
72_N 429_R 0.74 0.00
184_Y 337_L 0.74 0.00
228_R 386_I 0.74 0.00
55_I 97_R 0.73 0.00
188_T 376_V 0.73 0.00
22_Q 62_A 0.73 0.00
170_V 269_G 0.73 0.00
239_I 251_G 0.73 0.00
61_F 123_G 0.73 0.00
229_V 256_Q 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0822 seconds.