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OPENSEQ.org

PGK - TPIS
UniProt: P0A799 - P0A858
Length: 642
Sequences: 523
Seq/Len: 0.83
I_Prob: 0.00

PGK - Phosphoglycerate kinase
Paralog alert: 0.04 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: PGK
TPIS - Triosephosphate isomerase
Paralog alert: 0.08 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: TPIS
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
71_E 47_I 1.03 0.00
286_I 78_T 0.99 0.00
151_T 67_D 0.94 0.00
117_G 148_D 0.94 0.00
62_R 64_Q 0.93 0.00
378_V 147_I 0.90 0.00
324_I 195_A 0.89 0.00
39_A 187_H 0.89 0.00
117_G 245_I 0.88 0.00
45_E 164_I 0.87 0.00
378_V 47_I 0.86 0.00
302_K 161_G 0.86 0.00
294_L 178_A 0.85 0.00
47_A 187_H 0.84 0.00
334_A 143_C 0.84 0.00
40_S 110_A 0.83 0.00
73_S 227_I 0.83 0.00
40_S 150_V 0.82 0.00
99_V 3_H 0.82 0.00
106_L 132_A 0.81 0.00
279_A 205_V 0.81 0.00
134_D 185_A 0.81 0.00
94_D 245_I 0.81 0.00
208_A 197_V 0.80 0.00
171_L 230_A 0.79 0.00
125_L 143_C 0.79 0.00
15_R 179_T 0.79 0.00
152_H 69_N 0.78 0.00
208_A 179_T 0.78 0.00
98_G 186_V 0.78 0.00
344_L 23_V 0.77 0.00
80_Y 230_A 0.77 0.00
31_V 218_A 0.77 0.00
229_V 14_G 0.77 0.00
260_A 86_I 0.77 0.00
8_D 106_D 0.77 0.00
5_K 66_V 0.76 0.00
20_A 190_I 0.76 0.00
208_A 135_E 0.76 0.00
74_L 43_P 0.75 0.00
304_I 40_I 0.75 0.00
316_P 214_N 0.75 0.00
7_T 65_N 0.74 0.00
7_T 205_V 0.74 0.00
92_V 54_A 0.74 0.00
161_A 221_L 0.74 0.00
379_A 207_I 0.74 0.00
323_E 70_L 0.74 0.00
335_F 15_S 0.74 0.00
135_V 203_E 0.73 0.00
115_N 222_F 0.73 0.00
3_V 41_A 0.73 0.00
17_F 5_L 0.73 0.00
114_F 217_N 0.73 0.00
358_Y 183_A 0.73 0.00
201_L 123_P 0.72 0.00
95_Y 38_V 0.72 0.00
237_D 193_H 0.72 0.00
189_V 23_V 0.72 0.00
127_K 164_I 0.72 0.00
167_L 208_Q 0.72 0.00
378_V 44_E 0.72 0.00
4_I 239_A 0.71 0.00
151_T 208_Q 0.71 0.00
203_S 32_G 0.71 0.00
105_E 15_S 0.71 0.00
30_K 232_V 0.71 0.00
37_I 217_N 0.71 0.00
290_S 58_H 0.70 0.00
271_L 121_L 0.70 0.00
304_I 38_V 0.70 0.00
331_D 70_L 0.70 0.00
209_D 164_I 0.70 0.00
40_S 67_D 0.69 0.00
107_V 125_L 0.69 0.00
265_E 4_P 0.69 0.00
323_E 199_A 0.69 0.00
297_I 118_E 0.69 0.00
196_T 187_H 0.68 0.00
322_T 79_S 0.68 0.00
324_I 198_D 0.68 0.00
348_D 50_A 0.68 0.00
68_Y 68_L 0.68 0.00
251_I 220_E 0.68 0.00
114_F 169_V 0.68 0.00
196_T 123_P 0.68 0.00
128_K 196_K 0.68 0.00
11_L 187_H 0.68 0.00
155_G 30_L 0.68 0.00
6_M 60_M 0.68 0.00
223_A 176_K 0.68 0.00
92_V 188_K 0.68 0.00
290_S 89_Q 0.67 0.00
227_H 138_K 0.67 0.00
201_L 90_Y 0.67 0.00
54_V 186_V 0.67 0.00
196_T 39_A 0.67 0.00
212_I 145_R 0.67 0.00
163_A 169_V 0.67 0.00
67_E 203_E 0.67 0.00
284_L 214_N 0.67 0.00
48_L 74_F 0.67 0.00
208_A 190_I 0.67 0.00
88_P 232_V 0.67 0.00
295_A 122_T 0.66 0.00
6_M 147_I 0.66 0.00
205_S 154_Q 0.66 0.00
50_Q 74_F 0.66 0.00
292_Q 120_G 0.66 0.00
242_A 215_A 0.66 0.00
136_F 66_V 0.66 0.00
72_F 179_T 0.66 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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