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OPENSEQ.org

NUSB - RIBD
UniProt: P0A780 - P25539
Length: 506
Sequences: 459
Seq/Len: 0.93
I_Prob: 0.05

NUSB - N utilization substance protein B
Paralog alert: 0.76 [within 20: 0.05] - ratio of genomes with paralogs
Cluster includes: NUSB
RIBD - Riboflavin biosynthesis protein RibD
Paralog alert: 0.02 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RIBD
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_L 298_V 1.60 0.05
78_G 153_L 1.10 0.01
66_M 331_R 1.05 0.01
48_F 137_G 1.03 0.01
66_M 265_E 1.00 0.01
98_V 82_P 1.00 0.01
126_V 60_G 0.98 0.01
76_E 345_A 0.98 0.01
71_S 236_N 0.97 0.01
52_L 206_V 0.97 0.01
24_Q 146_F 0.96 0.01
62_L 45_R 0.95 0.01
72_R 226_Q 0.95 0.01
111_A 167_E 0.94 0.01
121_K 29_C 0.92 0.01
122_F 345_A 0.92 0.01
44_D 88_L 0.92 0.01
66_M 348_F 0.91 0.01
30_V 37_I 0.91 0.01
70_L 137_G 0.90 0.01
55_V 93_V 0.90 0.01
48_F 156_S 0.90 0.01
79_Q 29_C 0.90 0.01
99_P 76_S 0.90 0.01
125_G 49_P 0.89 0.01
16_A 245_V 0.88 0.01
115_G 281_L 0.88 0.01
130_A 18_R 0.87 0.01
81_E 281_L 0.87 0.01
100_Y 197_V 0.85 0.01
129_K 316_E 0.85 0.01
119_S 148_Y 0.85 0.01
21_Q 296_I 0.84 0.01
27_I 291_Q 0.84 0.01
120_H 300_A 0.83 0.00
122_F 203_A 0.83 0.00
110_L 104_N 0.82 0.00
135_R 176_A 0.82 0.00
85_L 323_P 0.81 0.00
63_D 92_G 0.81 0.00
103_A 139_L 0.81 0.00
111_A 293_I 0.81 0.00
44_D 298_V 0.80 0.00
99_P 183_L 0.80 0.00
66_M 146_F 0.80 0.00
51_L 162_A 0.80 0.00
88_A 348_F 0.80 0.00
69_Y 18_R 0.80 0.00
81_E 294_N 0.80 0.00
11_E 53_V 0.80 0.00
128_D 229_R 0.79 0.00
89_L 293_I 0.79 0.00
25_N 173_S 0.79 0.00
82_K 3_D 0.79 0.00
126_V 3_D 0.79 0.00
50_E 212_D 0.79 0.00
35_L 173_S 0.79 0.00
24_Q 283_V 0.79 0.00
14_V 48_E 0.79 0.00
99_P 107_V 0.79 0.00
72_R 88_L 0.78 0.00
119_S 107_V 0.78 0.00
120_H 156_S 0.78 0.00
108_I 57_R 0.78 0.00
88_A 255_R 0.78 0.00
48_F 141_R 0.78 0.00
90_Y 57_R 0.78 0.00
125_G 37_I 0.78 0.00
121_K 284_L 0.77 0.00
82_K 245_V 0.77 0.00
77_L 29_C 0.77 0.00
17_L 11_L 0.76 0.00
66_M 117_Q 0.76 0.00
110_L 142_M 0.76 0.00
62_L 179_D 0.76 0.00
11_E 49_P 0.76 0.00
27_I 238_V 0.76 0.00
119_S 144_T 0.76 0.00
48_F 339_L 0.76 0.00
117_E 348_F 0.76 0.00
126_V 99_S 0.75 0.00
80_V 289_G 0.75 0.00
70_L 330_A 0.75 0.00
132_P 191_L 0.75 0.00
19_S 324_K 0.74 0.00
77_L 42_Y 0.74 0.00
80_V 260_S 0.74 0.00
99_P 348_F 0.74 0.00
62_L 278_H 0.74 0.00
132_P 290_K 0.73 0.00
17_L 324_K 0.73 0.00
39_D 181_Q 0.73 0.00
87_I 104_N 0.73 0.00
119_S 104_N 0.73 0.00
19_S 141_R 0.73 0.00
37_E 53_V 0.73 0.00
112_K 294_N 0.73 0.00
83_A 226_Q 0.73 0.00
72_R 168_S 0.73 0.00
88_A 194_S 0.73 0.00
82_K 251_T 0.73 0.00
14_V 346_P 0.73 0.00
83_A 185_A 0.73 0.00
98_V 308_L 0.72 0.00
52_L 8_A 0.72 0.00
98_V 169_Q 0.72 0.00
92_L 86_D 0.72 0.00
80_V 32_V 0.72 0.00
125_G 62_K 0.72 0.00
77_L 339_L 0.72 0.00
57_T 270_L 0.72 0.00
75_E 37_I 0.72 0.00
117_E 176_A 0.72 0.00
88_A 302_P 0.72 0.00
126_V 64_K 0.72 0.00
126_V 291_Q 0.71 0.00
121_K 156_S 0.71 0.00
64_G 117_Q 0.71 0.00
87_I 48_E 0.71 0.00
21_Q 300_A 0.71 0.00
44_D 68_A 0.71 0.00
98_V 85_C 0.71 0.00
66_M 31_I 0.71 0.00
125_G 93_V 0.71 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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