May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ENGB - GPDA
UniProt: P0A6P7 - P0A6S7
Length: 549
Sequences: 347
Seq/Len: 0.70
I_Prob: 0.00

ENGB - Probable GTP-binding protein EngB
Paralog alert: 0.95 [within 20: 0.76] - ratio of genomes with paralogs
Cluster includes: ENGB
GPDA - Glycerol-3-phosphate dehydrogenase [NAD(P)+]
Paralog alert: 0.10 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: GPDA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
178_F 82_V 1.32 0.00
113_V 201_G 1.26 0.00
82_Y 288_R 1.10 0.00
46_L 302_V 1.07 0.00
109_L 85_S 1.07 0.00
30_A 85_S 1.06 0.00
31_F 281_G 1.05 0.00
37_A 117_G 1.04 0.00
26_G 106_V 1.04 0.00
56_S 20_L 1.02 0.00
49_Q 152_T 1.02 0.00
113_V 246_L 1.01 0.00
59_P 63_L 0.99 0.00
57_K 235_A 0.99 0.00
84_Y 109_T 0.98 0.00
189_L 18_T 0.96 0.00
66_N 8_M 0.96 0.00
106_R 205_S 0.95 0.00
114_V 205_S 0.95 0.00
111_G 257_Q 0.94 0.00
25_T 9_T 0.94 0.00
159_L 121_Q 0.93 0.00
116_M 316_C 0.91 0.00
32_A 241_M 0.91 0.00
43_L 238_A 0.91 0.00
29_V 114_A 0.90 0.00
29_V 332_R 0.90 0.00
66_N 9_T 0.89 0.00
171_G 219_I 0.88 0.00
190_R 311_Y 0.88 0.00
85_A 80_L 0.88 0.00
75_R 154_I 0.86 0.00
139_A 65_L 0.86 0.00
111_G 209_G 0.85 0.00
114_V 288_R 0.85 0.00
112_L 281_G 0.84 0.00
175_V 13_A 0.84 0.00
191_Q 235_A 0.84 0.00
171_G 302_V 0.84 0.00
176_E 101_P 0.83 0.00
34_R 256_N 0.82 0.00
190_R 272_D 0.82 0.00
76_L 36_H 0.81 0.00
130_I 10_V 0.81 0.00
27_I 289_N 0.81 0.00
193_L 293_V 0.81 0.00
76_L 128_L 0.81 0.00
193_L 323_A 0.81 0.00
176_E 28_G 0.80 0.00
106_R 135_A 0.80 0.00
103_L 289_N 0.80 0.00
42_A 188_V 0.80 0.00
114_V 233_L 0.79 0.00
189_L 177_F 0.79 0.00
45_T 289_N 0.79 0.00
149_K 87_V 0.79 0.00
189_L 8_M 0.79 0.00
76_L 206_D 0.79 0.00
77_V 321_R 0.78 0.00
176_E 96_K 0.78 0.00
151_A 95_I 0.78 0.00
74_K 107_W 0.78 0.00
112_L 219_I 0.78 0.00
186_V 93_R 0.78 0.00
110_Q 80_L 0.77 0.00
161_M 232_A 0.77 0.00
77_V 325_L 0.77 0.00
113_V 170_L 0.77 0.00
187_D 302_V 0.77 0.00
26_G 303_E 0.76 0.00
104_E 53_F 0.76 0.00
183_K 83_V 0.76 0.00
159_L 92_L 0.76 0.00
116_M 309_E 0.76 0.00
37_A 200_I 0.76 0.00
85_A 232_A 0.76 0.00
186_V 246_L 0.75 0.00
50_K 295_E 0.75 0.00
118_I 276_A 0.75 0.00
29_V 191_G 0.75 0.00
29_V 41_I 0.75 0.00
93_R 23_T 0.75 0.00
176_E 160_D 0.75 0.00
112_L 18_T 0.74 0.00
24_D 158_S 0.74 0.00
47_T 33_L 0.74 0.00
24_D 197_V 0.74 0.00
42_A 158_S 0.74 0.00
158_Q 153_A 0.74 0.00
139_A 10_V 0.74 0.00
48_N 270_G 0.73 0.00
189_L 28_G 0.73 0.00
197_F 290_T 0.73 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0206 seconds.