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OPENSEQ.org

DHSB - DHSC
UniProt: P07014 - P69054
Length: 367
Sequences: 316
Seq/Len: 0.87
I_Prob: 0.01

DHSB - Succinate dehydrogenase iron-sulfur subunit
Paralog alert: 0.40 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: DHSB FRDB
DHSC - Succinate dehydrogenase cytochrome b556 subunit
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: DHSC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2wdqBJF:CKG:DHLContact Map
3vr8BF:CG:DHContact Map
2h88BO:CP:DQContact Map
1kf6BN:DP:COContact Map
2bs2BE:CFContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
90_V 12_N 1.51 0.01
202_S 83_Y 1.43 0.01
118_K 90_R 1.39 0.01
89_I 53_S 1.38 0.01
89_I 25_I 1.28 0.01
92_R 18_I 1.26 0.01
214_S 107_K 1.25 0.01
139_Q 96_F 1.23 0.01
215_V 21_P 1.21 0.01
51_F 55_P 1.21 0.01
79_I 48_L 1.18 0.00
40_I 55_P 1.18 0.00
104_V 61_A 1.15 0.00
111_Y 97_G 1.15 0.00
104_V 40_A 1.11 0.00
100_I 36_I 1.11 0.00
215_V 18_I 1.11 0.00
151_L 66_G 1.11 0.00
70_K 21_P 1.11 0.00
67_M 40_A 1.09 0.00
76_I 114_F 1.08 0.00
87_K 83_Y 1.07 0.00
136_M 69_F 1.06 0.00
11_N 86_V 1.06 0.00
70_K 71_K 1.03 0.00
203_V 79_T 1.03 0.00
13_D 64_I 1.02 0.00
100_I 96_F 1.02 0.00
151_L 30_H 1.02 0.00
168_K 18_I 1.01 0.00
230_K 90_R 1.01 0.00
166_P 74_M 1.01 0.00
146_L 15_L 1.00 0.00
229_I 110_A 0.99 0.00
136_M 9_R 0.99 0.00
173_A 117_T 0.98 0.00
230_K 121_S 0.98 0.00
139_Q 80_A 0.98 0.00
25_L 67_S 0.97 0.00
183_I 82_A 0.97 0.00
207_H 44_L 0.97 0.00
139_Q 117_T 0.96 0.00
92_R 17_T 0.96 0.00
15_D 101_E 0.96 0.00
86_G 46_W 0.96 0.00
169_F 51_S 0.95 0.00
151_L 92_M 0.95 0.00
5_F 109_S 0.95 0.00
120_Y 70_V 0.93 0.00
201_F 23_T 0.93 0.00
63_D 13_L 0.93 0.00
157_T 23_T 0.92 0.00
35_L 42_G 0.91 0.00
10_Y 29_L 0.91 0.00
40_I 59_E 0.90 0.00
136_M 73_I 0.90 0.00
97_L 12_N 0.90 0.00
98_P 122_L 0.89 0.00
100_I 39_V 0.89 0.00
108_G 68_F 0.89 0.00
104_V 71_K 0.89 0.00
185_S 11_V 0.89 0.00
214_S 21_P 0.89 0.00
144_D 93_M 0.88 0.00
207_H 7_K 0.88 0.00
150_I 30_H 0.88 0.00
89_I 51_S 0.87 0.00
10_Y 18_I 0.87 0.00
91_I 16_Q 0.86 0.00
131_R 109_S 0.86 0.00
178_A 74_M 0.86 0.00
207_H 20_F 0.86 0.00
96_G 13_L 0.86 0.00
144_D 126_V 0.85 0.00
48_S 87_V 0.85 0.00
97_L 123_L 0.85 0.00
70_K 30_H 0.85 0.00
141_E 123_L 0.84 0.00
232_M 23_T 0.84 0.00
202_S 26_A 0.84 0.00
198_S 22_I 0.83 0.00
17_A 40_A 0.83 0.00
120_Y 7_K 0.83 0.00
96_G 11_V 0.83 0.00
92_R 13_L 0.83 0.00
28_D 19_R 0.83 0.00
139_Q 62_S 0.83 0.00
150_I 66_G 0.83 0.00
81_A 112_I 0.82 0.00
16_D 116_I 0.82 0.00
124_N 112_I 0.82 0.00
203_V 42_G 0.82 0.00
34_M 91_H 0.82 0.00
116_K 79_T 0.82 0.00
81_A 15_L 0.82 0.00
137_P 30_H 0.82 0.00
190_T 55_P 0.81 0.00
124_N 22_I 0.81 0.00
215_V 58_F 0.81 0.00
47_P 68_F 0.81 0.00
89_I 115_V 0.81 0.00
50_S 93_M 0.81 0.00
214_S 20_F 0.80 0.00
128_P 55_P 0.80 0.00
210_M 28_I 0.80 0.00
182_L 21_P 0.80 0.00
195_D 61_A 0.80 0.00
21_Q 70_V 0.80 0.00
41_Q 21_P 0.80 0.00
104_V 39_V 0.79 0.00
182_L 110_A 0.79 0.00
133_H 85_V 0.79 0.00
104_V 38_F 0.79 0.00
116_K 101_E 0.79 0.00
99_V 76_G 0.79 0.00
25_L 72_F 0.78 0.00
92_R 52_L 0.78 0.00
25_L 93_M 0.78 0.00
42_L 13_L 0.77 0.00
136_M 86_V 0.77 0.00
109_Q 29_L 0.77 0.00
166_P 51_S 0.77 0.00
167_D 44_L 0.77 0.00
173_A 118_V 0.77 0.00
98_P 58_F 0.77 0.00
168_K 29_L 0.77 0.00
182_L 23_T 0.77 0.00
228_H 41_V 0.76 0.00
109_Q 45_L 0.76 0.00
63_D 12_N 0.76 0.00
144_D 46_W 0.76 0.00
123_N 71_K 0.76 0.00
120_Y 50_T 0.76 0.00
156_S 8_Q 0.76 0.00
192_S 60_Q 0.76 0.00
223_T 24_A 0.76 0.00
13_D 48_L 0.76 0.00
39_L 109_S 0.76 0.00
136_M 100_E 0.76 0.00
50_S 124_A 0.76 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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