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OPENSEQ.org

PNP - RBFA
UniProt: P05055 - P0A7G2
Length: 844
Sequences: 525
Seq/Len: 0.64
I_Prob: 0.00

PNP - Polyribonucleotide nucleotidyltransferase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: PNP
RBFA - Ribosome-binding factor A
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RBFA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
672_V 23_L 1.48 0.00
655_A 71_A 1.18 0.00
654_I 113_V 1.16 0.00
597_I 87_M 1.13 0.00
479_S 44_S 1.12 0.00
105_E 83_L 1.12 0.00
199_D 32_L 1.10 0.00
587_I 110_S 1.10 0.00
331_T 23_L 1.04 0.00
450_L 12_A 1.04 0.00
394_G 55_T 1.01 0.00
136_A 79_I 0.99 0.00
691_E 44_S 0.97 0.00
70_A 37_T 0.97 0.00
684_R 106_G 0.97 0.00
72_R 43_M 0.95 0.00
12_G 79_I 0.95 0.00
469_V 8_P 0.95 0.00
281_L 32_L 0.95 0.00
597_I 77_G 0.95 0.00
615_I 84_G 0.94 0.00
520_Q 19_I 0.94 0.00
601_D 36_T 0.93 0.00
559_K 52_V 0.93 0.00
53_G 37_T 0.90 0.00
302_K 17_K 0.90 0.00
70_A 55_T 0.89 0.00
464_I 110_S 0.89 0.00
275_S 63_D 0.88 0.00
150_G 49_Y 0.88 0.00
246_V 52_V 0.88 0.00
505_L 82_L 0.88 0.00
113_V 36_T 0.88 0.00
560_I 89_L 0.88 0.00
334_L 109_M 0.87 0.00
44_V 24_Q 0.86 0.00
646_E 14_E 0.86 0.00
598_A 23_L 0.86 0.00
505_L 36_T 0.85 0.00
251_E 49_Y 0.85 0.00
618_E 25_R 0.85 0.00
539_Q 53_Y 0.85 0.00
169_E 57_L 0.85 0.00
133_G 68_G 0.85 0.00
520_Q 113_V 0.84 0.00
477_V 83_L 0.84 0.00
254_L 110_S 0.84 0.00
368_L 18_E 0.84 0.00
162_V 20_A 0.84 0.00
469_V 22_I 0.83 0.00
542_N 77_G 0.83 0.00
409_R 112_L 0.82 0.00
460_A 21_L 0.82 0.00
184_A 53_Y 0.82 0.00
273_I 85_K 0.81 0.00
457_I 51_K 0.81 0.00
651_I 75_A 0.81 0.00
151_A 32_L 0.81 0.00
591_D 98_F 0.80 0.00
640_A 28_K 0.80 0.00
500_D 53_Y 0.80 0.00
280_T 32_L 0.80 0.00
529_A 24_Q 0.80 0.00
673_P 23_L 0.80 0.00
29_A 71_A 0.80 0.00
68_Y 77_G 0.79 0.00
612_I 87_M 0.79 0.00
279_A 115_S 0.79 0.00
670_Q 109_M 0.79 0.00
66_R 44_S 0.79 0.00
540_A 23_L 0.79 0.00
625_Y 25_R 0.79 0.00
616_T 99_Y 0.79 0.00
622_G 77_G 0.79 0.00
568_V 37_T 0.79 0.00
543_A 67_A 0.78 0.00
597_I 109_M 0.78 0.00
367_E 17_K 0.78 0.00
476_V 53_Y 0.78 0.00
150_G 89_L 0.77 0.00
223_V 116_V 0.77 0.00
452_D 89_L 0.77 0.00
197_S 22_I 0.77 0.00
610_R 95_L 0.77 0.00
122_P 55_T 0.77 0.00
618_E 107_M 0.77 0.00
175_L 87_M 0.76 0.00
365_L 96_T 0.76 0.00
473_D 89_L 0.76 0.00
560_I 105_E 0.76 0.00
646_E 36_T 0.76 0.00
579_L 110_S 0.76 0.00
113_V 53_Y 0.75 0.00
684_R 18_E 0.75 0.00
62_N 73_Q 0.75 0.00
260_I 116_V 0.75 0.00
203_G 38_V 0.75 0.00
685_I 57_L 0.75 0.00
246_V 78_F 0.75 0.00
632_I 37_T 0.75 0.00
260_I 36_T 0.75 0.00
130_A 27_I 0.75 0.00
554_R 10_R 0.75 0.00
630_T 19_I 0.75 0.00
211_Q 23_L 0.75 0.00
539_Q 87_M 0.75 0.00
89_T 80_R 0.75 0.00
692_A 19_I 0.75 0.00
620_E 82_L 0.74 0.00
414_V 53_Y 0.74 0.00
57_F 72_L 0.74 0.00
159_D 83_L 0.74 0.00
6_V 27_I 0.74 0.00
199_D 57_L 0.74 0.00
474_N 79_I 0.74 0.00
278_I 102_S 0.74 0.00
479_S 113_V 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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