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OPENSEQ.org

RL15 - RPOA
UniProt: P02413 - P0A7Z4
Length: 473
Sequences: 830
Seq/Len: 1.78
I_Prob: 0.26

RL15 - 50S ribosomal protein L15
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: RL15
RPOA - DNA-directed RNA polymerase subunit alpha
Paralog alert: 0.02 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: RPOA
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
119_P 85_L 1.47 0.26
91_D 259_D 1.37 0.20
128_T 202_V 1.18 0.11
55_M 197_D 1.17 0.11
78_R 213_P 1.14 0.10
35_H 196_T 1.11 0.09
19_L 47_L 1.09 0.09
79_L 120_D 1.07 0.08
112_L 175_A 1.03 0.07
2_R 226_E 1.02 0.07
102_G 163_E 1.00 0.06
40_S 143_R 0.99 0.06
10_E 131_C 0.98 0.06
129_K 17_E 0.98 0.06
98_A 228_L 0.97 0.06
30_T 155_A 0.97 0.06
121_T 311_G 0.97 0.06
40_S 57_T 0.96 0.05
59_R 173_V 0.96 0.05
24_G 108_G 0.92 0.05
134_A 80_E 0.91 0.04
4_N 29_E 0.91 0.04
33_R 293_P 0.91 0.04
13_K 39_L 0.90 0.04
134_A 132_H 0.88 0.04
79_L 112_A 0.88 0.04
142_I 80_E 0.87 0.04
91_D 213_P 0.87 0.04
115_E 137_N 0.86 0.04
102_G 81_I 0.86 0.04
91_D 247_P 0.86 0.04
12_S 127_Q 0.85 0.03
111_I 263_T 0.85 0.03
93_N 247_P 0.84 0.03
64_F 303_I 0.84 0.03
100_I 121_V 0.84 0.03
40_S 239_Q 0.83 0.03
111_I 26_V 0.82 0.03
33_R 308_A 0.82 0.03
33_R 195_R 0.82 0.03
43_G 231_F 0.81 0.03
81_D 252_I 0.81 0.03
71_A 60_E 0.81 0.03
133_A 211_I 0.81 0.03
119_P 102_L 0.81 0.03
42_S 81_I 0.81 0.03
16_G 139_S 0.81 0.03
118_T 136_E 0.80 0.03
33_R 313_S 0.80 0.03
8_P 204_E 0.80 0.03
24_G 196_T 0.80 0.03
100_I 177_Y 0.79 0.03
141_K 215_E 0.79 0.03
121_T 35_F 0.79 0.03
141_K 20_S 0.79 0.03
10_E 127_Q 0.79 0.03
64_F 301_T 0.79 0.03
94_T 81_I 0.78 0.03
79_L 60_E 0.78 0.03
127_V 303_I 0.78 0.03
31_G 225_A 0.78 0.03
100_I 194_Q 0.78 0.03
117_T 210_T 0.78 0.03
110_V 140_I 0.77 0.03
134_A 230_A 0.77 0.03
136_E 280_D 0.77 0.03
77_I 240_P 0.77 0.03
99_N 72_E 0.77 0.02
101_I 241_E 0.77 0.02
31_G 311_G 0.77 0.02
8_P 196_T 0.77 0.02
130_G 123_I 0.76 0.02
69_R 173_V 0.76 0.02
59_R 294_N 0.76 0.02
97_A 202_V 0.76 0.02
70_K 172_L 0.76 0.02
59_R 14_V 0.76 0.02
29_K 286_E 0.76 0.02
117_T 203_I 0.75 0.02
90_V 253_L 0.74 0.02
12_S 143_R 0.74 0.02
36_K 224_L 0.74 0.02
4_N 177_Y 0.74 0.02
126_R 75_Q 0.74 0.02
67_T 93_Q 0.73 0.02
141_K 96_D 0.73 0.02
58_Y 195_R 0.73 0.02
42_S 156_S 0.73 0.02
64_F 297_K 0.72 0.02
102_G 212_D 0.72 0.02
93_N 213_P 0.72 0.02
110_V 88_L 0.72 0.02
16_G 138_A 0.72 0.02
110_V 74_V 0.72 0.02
42_S 208_N 0.72 0.02
29_K 255_R 0.72 0.02
54_Q 268_N 0.71 0.02
137_A 25_K 0.71 0.02
14_K 85_L 0.71 0.02
132_R 127_Q 0.71 0.02
80_S 79_L 0.71 0.02
42_S 22_T 0.71 0.02
24_G 257_V 0.71 0.02
74_T 153_V 0.71 0.02
29_K 314_L 0.70 0.02
58_Y 217_I 0.70 0.02
4_N 115_I 0.70 0.02
2_R 78_I 0.70 0.02
57_L 97_E 0.70 0.02
6_L 140_I 0.70 0.02
70_K 137_N 0.70 0.02
24_G 156_S 0.70 0.02
4_N 8_F 0.70 0.02
35_H 224_L 0.70 0.02
59_R 269_C 0.70 0.02
95_L 223_I 0.70 0.02
12_S 173_V 0.69 0.02
40_S 307_L 0.69 0.02
97_A 123_I 0.69 0.02
26_G 209_G 0.69 0.02
108_A 308_A 0.69 0.02
40_S 72_E 0.69 0.02
12_S 259_D 0.69 0.02
24_G 199_D 0.69 0.02
132_R 128_H 0.69 0.02
33_R 58_E 0.69 0.02
117_T 107_I 0.69 0.02
43_G 209_G 0.69 0.02
75_A 46_I 0.69 0.02
23_I 108_G 0.69 0.02
14_K 8_F 0.69 0.02
23_I 223_I 0.68 0.02
134_A 16_I 0.68 0.02
6_L 31_L 0.68 0.02
110_V 189_A 0.68 0.02
29_K 304_K 0.68 0.02
42_S 51_M 0.68 0.02
133_A 113_A 0.68 0.02
99_N 50_S 0.68 0.02
70_K 230_A 0.68 0.02
14_K 127_Q 0.67 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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