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r1 and r2 Return to Main Page
Instructions
  • Use the menu to the right to browse the coupling matrix, or select a position from the PSSM below to see what it is coupled with.
Conservation matrix (aka PSSM)
- A F I L V M W Y D E K R H N Q S T G P C
0001 0.7 -0.2 0.1 0 0.5 -0.3 -0.5 -0.5 -0.3 -0.3 0 0.1 0.1 -0.5 -0.5 0.7 0.8 0.8 -0.3 -0.5
0002 0.2 -0.6 -0.3 -0.6 -0.6 -0.1 -0.6 -0.6 -0.3 -0.6 0.9 0.9 -0.1 -0.1 0.4 0.9 0.3 2 -0.6 -0.6
0003 -0.3 -0.3 0.3 -0.1 0.1 -0.3 -0.3 -0.3 -0.1 0.1 -0.3 -0.1 0.8 0.6 0.6 0 0.5 0.1 0 -0.3
0004 -0.4 -0.1 -0.6 -0.5 0.3 -0.4 -0.7 0.3 0.3 -0.2 1.3 0.9 -0.2 0 0.6 1.1 0.9 -0.7 -0.7 -0.7
0005 0.8 0.9 1.5 -0.1 0.7 -0.4 -0.4 0.7 -0.4 -0.4 -0.4 -0.4 -0.4 0.1 -0.4 -0.4 0 -0.4 -0.4 -0.4
0006 -0.1 -0.5 0 0.2 -0.2 -0.5 -0.5 -0.2 -0.2 0.4 0.6 0.7 0 -0.5 0.2 0.6 0.5 0.9 -0.4 -0.5
0007 0.2 -0.2 -0.6 -0.6 -0.2 -0.6 -0.6 0.3 1.5 0.5 0.6 0.1 -0.1 1.5 -0.1 -0.1 -0.3 0.6 -0.6 -0.6
0008 0.8 0 1.3 0.5 1.7 0.2 -0.5 -0.5 -0.5 -0.5 -0.5 -0.2 -0.5 0.7 0.2 -0.5 0.3 -0.3 -0.5 -0.5
0009 -0.4 -0.2 0.1 -0.3 0.7 -0.4 -0.6 -0.3 0.3 0.5 1 0.5 -0.3 0.1 0.1 0.1 0.8 -0.3 -0.6 -0.2
0010 0.9 -0.4 0.8 0.1 0.9 0.5 -0.4 -0.4 -0.4 -0.4 -0.4 -0.2 -0.4 -0.1 -0.1 0.1 0.9 0.2 -0.4 -0.4
0011 0.2 -0.1 -0.4 0.4 -0.7 -0.1 -0.7 -0.4 0.2 0.9 0.7 0.4 -0.5 -0.7 -0.4 1.5 0.9 0.1 -0.4 -0.7
0012 0.2 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 1.3 0.8 0.1 -0.2 -0.1 0.4 0 0.1 -0.3 1.2 -0.3 -0.3
0013 -0.4 -0.4 -0.7 -0.2 -0.7 0 -0.7 -0.4 0.8 0.6 0.7 -0.2 -0.2 0.9 0.5 0 0.1 0.6 -0.7 -0.7
0014 1.8 -0.3 -0.3 -0.3 0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 0.9 -0.1 1.1 -0.3 -0.3
0015 -0.2 -0.5 0.1 -0.4 -0.1 0.2 -0.5 -0.2 -0.1 0 1.2 1.6 -0.2 0.2 0.3 0.1 0.1 -0.5 -0.5 -0.2
0016 1.5 0.5 0.3 0.5 0.8 -0.1 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 0.3 0.1 0.3 -0.1 -0.4 -0.4
0017 -0.1 0.2 0 1.3 -0.3 0.4 -0.2 -0.5 -0.6 0.2 -0.1 0.5 0.9 0 1.1 -0.1 -0.6 -0.6 -0.6 -0.6
0018 0.9 0 0.9 0.3 1.4 0.2 -0.5 0.4 -0.2 -0.5 -0.5 -0.5 -0.5 0.4 0.4 -0.5 0.7 -0.5 -0.5 -0.5
0019 -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 2.7 -0.1 -0.1
0020 -0.3 0.2 0.5 0 0.1 0.2 -0.3 -0.1 0.6 -0.3 0.1 0.2 0.1 0.9 -0.1 -0.1 -0.1 -0.3 -0.3 -0.3
0021 0.3 0.4 0.8 0 0.9 -0.3 -0.6 0.3 -0.2 0.7 -0.6 -0.2 -0.3 -0.6 0.1 0.5 0.2 -0.6 0.6 -0.6
0022 1.1 0 0.6 -0.2 0.7 0.1 -0.6 -0.6 -0.6 -0.6 0.1 0.1 -0.4 -0.3 0.1 0.2 1 -0.4 0.7 -0.6
0023 0 -0.3 0.2 -0.8 -0.2 -0.8 -0.8 -0.3 0.4 0.2 0.2 0.4 -0.4 1 -0.5 1.2 0.6 1.1 -0.1 -0.3
0024 -0.2 -0.2 0.2 0.1 0.4 0 -0.2 -0.2 0 -0.2 -0.2 0 0.2 0.5 0.3 0.4 0 -0.2 -0.2 -0.2
0025 -0.1 -0.6 0.1 0.3 0.5 -0.4 -0.6 -0.3 0.7 0.3 0 0.7 0 0 -0.2 1.1 1 -0.3 -0.6 -0.6
0026 0.3 1 0.8 0.2 1 -0.1 -0.3 0.5 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.1 -0.3 -0.3
0027 0 -0.4 -0.4 -0.4 0.1 -0.4 -0.4 -0.4 0.9 0.5 0.1 0.4 0.2 0.1 -0.2 0.6 -0.1 0.9 -0.4 -0.4
0028 -0.5 -0.5 -0.3 -0.5 0.2 -0.5 -0.5 -0.5 0.6 0.6 0.5 0 0.3 0.6 0.2 0.5 0.4 0.7 -0.5 -0.2
0029 0.4 -0.4 1.1 0.9 1 0.1 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 0.5 0.1 -0.4 0.3 -0.1 -0.4 -0.4
0030 0.1 -0.3 0.4 -0.3 0 -0.5 -0.8 -0.5 0.5 0.7 0.8 0.2 0.2 0.3 0.3 0.6 1.5 -0.8 -0.8 -0.8
- A F I L V M W Y D E K R H N Q S T G P C
0031 2.3 -0.1 0.4 0.1 1.6 -0.1 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.1 -0.4 -0.4 0.8 0.3 -0.4 -0.4
0032 0 -0.5 -0.4 -0.5 -0.5 -0.5 -0.5 -0.5 0.6 0.5 0.9 0.8 -0.3 -0.3 0.4 0.7 0.8 0.9 -0.5 -0.5
0033 -0.2 -0.4 -0.4 -0.4 -0.2 -0.3 -0.4 -0.3 0.9 0.8 0.4 0 -0.4 0.6 -0.2 0.4 0.1 1.1 -0.2 -0.4
0034 -0.5 -0.7 -0.7 -0.7 -0.7 -0.5 -0.5 -0.5 0.3 1.2 0.8 0.7 0.4 0.9 0.1 1 0.2 1.1 -0.5 -0.7
0035 1.3 -0.3 -0.3 -0.3 0.1 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 -0.3 1.5 0.5 0.8 -0.3 -0.3
0036 0.1 0.5 0.2 -0.4 0.5 -0.7 -0.4 -0.7 -0.4 -0.4 2 1.8 -0.4 0 -0.4 -0.2 0.5 0 -0.7 -0.7
0037 1 -0.2 0.4 0.1 1.4 0 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 -0.4 0.4 0.5 0 0.6 -0.4 -0.4
0038 0 0.7 0.5 0.9 1 0.6 -0.6 -0.4 -0.6 -0.6 -0.6 0.1 1.1 0 1.1 -0.6 -0.6 -0.3 -0.6 -0.6
0039 0.6 0.2 1.5 0.1 1.2 -0.2 -0.5 0.4 -0.5 -0.2 -0.5 -0.5 -0.5 0.5 0.4 -0.5 0.1 -0.2 -0.5 -0.5
0040 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 0.2 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 -0.1 2.7 -0.1 -0.1
0041 0.2 -0.4 0.3 -0.2 0.9 0.1 -0.4 -0.2 1 -0.2 -0.4 -0.1 -0.3 1.2 0.1 0 0.2 -0.4 -0.4 -0.4
0042 0.2 0.2 0.6 -0.4 0.6 0.5 -0.6 0 -0.6 -0.2 0.4 0.5 -0.4 -0.1 0.5 0.6 1 -0.6 -0.6 -0.6
Select residue pair below:
i_j Score Prob
0008_0029 2.672 1.00
0005_0026 2.479 1.00
0018_0039 2.476 1.00
0013_0034 2.466 1.00
0003_0024 2.150 1.00
0010_0031 1.929 0.99
0016_0037 1.434 0.94
0004_0007 1.427 0.94
0017_0038 1.397 0.93
0014_0035 1.341 0.91
0006_0027 1.321 0.90
0014_0037 1.243 0.85
0006_0032 1.139 0.78
0024_0041 1.089 0.73
0009_0030 1.072 0.72
0003_0020 1.035 0.68
0029_0035 1.033 0.68
0020_0041 0.975 0.61
0021_0042 0.974 0.61
0008_0033 0.968 0.60
0015_0025 0.956 0.59
0003_0016 0.939 0.57
0018_0029 0.921 0.54
0012_0033 0.903 0.52
0017_0021 0.857 0.47
0025_0031 0.845 0.45
0006_0029 0.841 0.45
0022_0041 0.833 0.44
0006_0031 0.822 0.42
0026_0039 0.817 0.42
0011_0027 0.803 0.40
0015_0028 0.802 0.40
0007_0042 0.801 0.40
0001_0009 0.785 0.38
0015_0027 0.779 0.37
0013_0033 0.767 0.36
0012_0027 0.767 0.36
0009_0023 0.763 0.35
0020_0024 0.757 0.35
0001_0004 0.755 0.35
0003_0026 0.752 0.34
0010_0035 0.748 0.34
0001_0033 0.744 0.33
0024_0037 0.742 0.33
0009_0027 0.730 0.32
0007_0028 0.714 0.30
0027_0032 0.697 0.28
0012_0041 0.695 0.28
0002_0010 0.690 0.28
0028_0039 0.686 0.27
0021_0035 0.684 0.27
0016_0032 0.678 0.26
0001_0012 0.665 0.25
0005_0020 0.654 0.24
0005_0024 0.650 0.24
0020_0026 0.641 0.23
0017_0042 0.639 0.23
0015_0036 0.628 0.22
0012_0020 0.627 0.22
0019_0040 0.621 0.21
0011_0032 0.592 0.19
0014_0024 0.592 0.19
Local Interactions:
i_j Score Prob
0003_0005 0.946 0.58
0033_0035 0.906 0.53
0022_0024 0.891 0.51
0014_0016 0.884 0.50
0037_0038 0.720 0.31
0026_0028 0.711 0.30
0024_0026 0.709 0.30
0001_0002 0.703 0.29
0010_0012 0.685 0.27
0027_0028 0.595 0.19
See all coupling residues
Download raw data
Renumber residues to start with:
Position: 1 2 3 4 5 ...
Sequence: G R N S A ...
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