| catpasa |
| ID: | 1461011470 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 994 (971) | ||
| Sequences: | 7327 (4270.9) | ||
| Seq/Len: | 7.546 | ||
| Nf(neff/√len): | 137.1 |
HHblits Results: (2016_02)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 7.546).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 163_I | 221_G | 7.472 | 1.00 |
| 26_P | 132_A | 5.069 | 1.00 |
| 29_V | 33_L | 4.842 | 1.00 |
| 151_V | 163_I | 4.424 | 1.00 |
| 636_C | 675_C | 4.160 | 1.00 |
| 36_Y | 147_P | 4.118 | 1.00 |
| 346_S | 696_E | 4.077 | 1.00 |
| 755_N | 819_R | 4.026 | 1.00 |
| 28_Q | 32_H | 4.017 | 1.00 |
| 616_D | 818_D | 4.001 | 1.00 |
| 40_E | 143_R | 3.937 | 1.00 |
| 365_K | 557_D | 3.910 | 1.00 |
| 416_I | 594_V | 3.831 | 1.00 |
| 175_V | 214_I | 3.752 | 1.00 |
| 151_V | 221_G | 3.648 | 1.00 |
| 514_V | 591_L | 3.561 | 1.00 |
| 173_L | 219_A | 3.504 | 1.00 |
| 689_E | 713_K | 3.449 | 1.00 |
| 147_P | 226_T | 3.411 | 1.00 |
| 662_P | 665_E | 3.328 | 1.00 |
| 63_R | 67_L | 3.307 | 1.00 |
| 663_L | 686_K | 3.289 | 1.00 |
| 28_Q | 31_R | 3.285 | 1.00 |
| 511_K | 568_D | 3.273 | 1.00 |
| 163_I | 208_L | 3.200 | 1.00 |
| 48_S | 51_E | 3.195 | 1.00 |
| 667_R | 693_S | 3.180 | 1.00 |
| 207_M | 224_A | 3.152 | 1.00 |
| 33_L | 226_T | 3.112 | 1.00 |
| 619_I | 747_V | 3.061 | 1.00 |
| 358_T | 605_K | 3.021 | 1.00 |
| 13_L | 222_I | 3.020 | 1.00 |
| 719_A | 731_S | 2.960 | 1.00 |
| 47_K | 55_E | 2.924 | 1.00 |
| 659_D | 683_H | 2.923 | 1.00 |
| 130_Y | 220_L | 2.912 | 1.00 |
| 42_P | 228_V | 2.891 | 1.00 |
| 175_V | 208_L | 2.881 | 1.00 |
| 151_V | 160_P | 2.845 | 1.00 |
| 946_L | 950_V | 2.758 | 1.00 |
| 208_L | 221_G | 2.756 | 1.00 |
| 606_E | 739_N | 2.721 | 1.00 |
| 246_K | 254_D | 2.716 | 1.00 |
| 31_R | 35_K | 2.715 | 1.00 |
| 33_L | 38_H | 2.624 | 1.00 |
| 329_K | 748_E | 2.618 | 1.00 |
| 526_N | 590_D | 2.595 | 1.00 |
| 204_K | 209_F | 2.590 | 1.00 |
| 609_G | 613_L | 2.562 | 1.00 |
| 566_T | 592_T | 2.554 | 1.00 |
| 150_I | 166_L | 2.517 | 1.00 |
| 538_T | 541_V | 2.509 | 1.00 |
| 612_Q | 616_D | 2.496 | 1.00 |
| 231_E | 234_K | 2.495 | 1.00 |
| 620_R | 674_C | 2.485 | 1.00 |
| 38_H | 144_D | 2.483 | 1.00 |
| 126_M | 139_R | 2.472 | 1.00 |
| 954_P | 961_A | 2.471 | 1.00 |
| 73_F | 91_P | 2.468 | 1.00 |
| 554_T | 598_G | 2.455 | 1.00 |
| 613_L | 748_E | 2.435 | 1.00 |
| 331_A | 742_T | 2.424 | 1.00 |
| 633_I | 637_R | 2.409 | 1.00 |
| 614_C | 744_V | 2.398 | 1.00 |
| 495_S | 512_M | 2.389 | 1.00 |
| 13_L | 20_E | 2.376 | 1.00 |
| 49_L | 106_V | 2.376 | 1.00 |
| 653_Y | 661_L | 2.371 | 1.00 |
| 163_I | 224_A | 2.353 | 1.00 |
| 482_E | 510_N | 2.352 | 1.00 |
| 543_E | 547_S | 2.349 | 1.00 |
| 565_A | 591_L | 2.347 | 1.00 |
| 622_I | 691_L | 2.304 | 1.00 |
| 153_V | 159_V | 2.300 | 1.00 |
| 495_S | 514_V | 2.300 | 1.00 |
| 275_N | 295_Y | 2.291 | 1.00 |
| 913_L | 937_I | 2.279 | 1.00 |
| 603_P | 639_I | 2.278 | 1.00 |
| 211_G | 232_I | 2.268 | 1.00 |
| 509_G | 568_D | 2.251 | 1.00 |
| 329_K | 745_A | 2.245 | 1.00 |
| 8_S | 11_E | 2.243 | 1.00 |
| 692_Q | 713_K | 2.237 | 1.00 |
| 146_V | 226_T | 2.207 | 1.00 |
| 606_E | 609_G | 2.204 | 1.00 |
| 550_K | 553_G | 2.176 | 1.00 |
| 480_K | 498_C | 2.156 | 1.00 |
| 130_Y | 152_E | 2.124 | 1.00 |
| 414_A | 448_L | 2.123 | 1.00 |
| 57_F | 102_A | 2.117 | 1.00 |
| 12_C | 222_I | 2.108 | 1.00 |
| 480_K | 499_S | 2.104 | 1.00 |
| 174_R | 216_A | 2.076 | 1.00 |
| 332_I | 736_A | 2.066 | 1.00 |
| 545_I | 593_F | 2.060 | 1.00 |
| 563_A | 593_F | 2.051 | 1.00 |
| 30_K | 34_E | 2.022 | 1.00 |
| 137_V | 152_E | 2.022 | 1.00 |
| 103_I | 107_W | 2.019 | 1.00 |
| 422_D | 481_K | 2.017 | 1.00 |
| 13_L | 166_L | 2.009 | 1.00 |
| 159_V | 214_I | 2.007 | 1.00 |
| 493_S | 524_R | 2.002 | 1.00 |
| 49_L | 53_V | 2.001 | 1.00 |
| 173_L | 214_I | 2.001 | 1.00 |
| 752_A | 812_P | 1.998 | 1.00 |
| 167_S | 220_L | 1.984 | 1.00 |
| 514_V | 521_V | 1.982 | 1.00 |
| 141_K | 144_D | 1.978 | 1.00 |
| 416_I | 513_F | 1.968 | 1.00 |
| 38_H | 143_R | 1.924 | 1.00 |
| 559_L | 598_G | 1.910 | 1.00 |
| 527_Y | 592_T | 1.910 | 1.00 |
| 30_K | 33_L | 1.910 | 1.00 |
| 253_L | 315_I | 1.906 | 1.00 |
| 499_S | 510_N | 1.900 | 1.00 |
| 436_K | 443_T | 1.899 | 1.00 |
| 152_E | 220_L | 1.894 | 1.00 |
| 963_D | 966_Q | 1.879 | 1.00 |
| 165_I | 208_L | 1.874 | 1.00 |
| 561_C | 596_V | 1.865 | 1.00 |
| 386_G | 389_Y | 1.861 | 1.00 |
| 221_G | 224_A | 1.858 | 1.00 |
| 130_Y | 137_V | 1.851 | 1.00 |
| 495_S | 588_E | 1.838 | 1.00 |
| 611_I | 641_I | 1.830 | 1.00 |
| 165_I | 221_G | 1.823 | 1.00 |
| 902_S | 944_H | 1.821 | 1.00 |
| 895_E | 966_Q | 1.817 | 1.00 |
| 494_M | 515_K | 1.812 | 1.00 |
| 69_A | 95_L | 1.808 | 1.00 |
| 66_L | 70_C | 1.806 | 1.00 |
| 145_I | 151_V | 1.801 | 1.00 |
| 364_C | 638_R | 1.795 | 1.00 |
| 745_A | 748_E | 1.746 | 1.00 |
| 567_R | 589_T | 1.745 | 1.00 |
| 347_V | 622_I | 1.730 | 1.00 |
| 412_E | 566_T | 1.726 | 1.00 |
| 296_F | 300_V | 1.724 | 1.00 |
| 554_T | 559_L | 1.724 | 1.00 |
| 262_K | 266_L | 1.722 | 1.00 |
| 333_V | 733_M | 1.712 | 1.00 |
| 566_T | 594_V | 1.701 | 1.00 |
| 31_R | 34_E | 1.701 | 1.00 |
| 667_R | 690_Y | 1.695 | 1.00 |
| 497_Y | 569_T | 1.690 | 1.00 |
| 130_Y | 150_I | 1.687 | 1.00 |
| 541_V | 544_K | 1.681 | 1.00 |
| 982_E | 985_K | 1.677 | 1.00 |
| 528_V | 541_V | 1.676 | 1.00 |
| 441_T | 599_M | 1.674 | 1.00 |
| 567_R | 590_D | 1.670 | 1.00 |
| 126_M | 141_K | 1.669 | 1.00 |
| 58_E | 63_R | 1.667 | 1.00 |
| 711_L | 727_A | 1.666 | 1.00 |
| 671_R | 694_Y | 1.664 | 1.00 |
| 542_K | 546_L | 1.662 | 1.00 |
| 128_K | 154_A | 1.658 | 1.00 |
| 153_V | 214_I | 1.656 | 1.00 |
| 128_K | 137_V | 1.656 | 1.00 |
| 251_Q | 824_P | 1.651 | 1.00 |
| 386_G | 393_G | 1.648 | 1.00 |
| 624_I | 687_I | 1.643 | 1.00 |
| 345_T | 716_I | 1.641 | 1.00 |
| 606_E | 741_S | 1.639 | 1.00 |
| 535_V | 541_V | 1.630 | 1.00 |
| 145_I | 223_V | 1.627 | 1.00 |
| 19_S | 22_T | 1.614 | 1.00 |
| 153_V | 208_L | 1.608 | 1.00 |
| 771_E | 799_T | 1.605 | 1.00 |
| 150_I | 222_I | 1.595 | 1.00 |
| 523_D | 542_K | 1.593 | 1.00 |
| 552_W | 630_G | 1.592 | 1.00 |
| 521_V | 525_C | 1.588 | 1.00 |
| 245_D | 692_Q | 1.584 | 1.00 |
| 666_Q | 686_K | 1.584 | 1.00 |
| 13_L | 150_I | 1.583 | 1.00 |
| 265_S | 269_V | 1.582 | 1.00 |
| 16_F | 32_H | 1.581 | 1.00 |
| 911_N | 914_N | 1.579 | 1.00 |
| 43_A | 120_K | 1.577 | 1.00 |
| 512_M | 569_T | 1.574 | 1.00 |
| 165_I | 219_A | 1.570 | 1.00 |
| 608_M | 612_Q | 1.567 | 1.00 |
| 106_V | 110_R | 1.560 | 1.00 |
| 25_T | 29_V | 1.559 | 1.00 |
| 699_A | 718_I | 1.558 | 1.00 |
| 539_G | 542_K | 1.557 | 1.00 |
| 491_R | 588_E | 1.556 | 1.00 |
| 363_V | 445_L | 1.555 | 1.00 |
| 255_E | 259_Q | 1.548 | 1.00 |
| 391_P | 434_Y | 1.542 | 1.00 |
| 165_I | 191_T | 1.539 | 1.00 |
| 609_G | 612_Q | 1.534 | 1.00 |
| 829_I | 833_L | 1.534 | 1.00 |
| 165_I | 168_I | 1.526 | 1.00 |
| 545_I | 596_V | 1.526 | 1.00 |
| 493_S | 588_E | 1.523 | 1.00 |
| 47_K | 51_E | 1.520 | 1.00 |
| 66_L | 98_L | 1.517 | 0.99 |
| 564_L | 597_V | 1.514 | 0.99 |
| 26_P | 138_Q | 1.502 | 0.99 |
| 629_K | 654_T | 1.500 | 0.99 |
| 272_W | 299_A | 1.498 | 0.99 |
| 27_D | 31_R | 1.495 | 0.99 |
| 25_T | 28_Q | 1.492 | 0.99 |
| 53_V | 106_V | 1.488 | 0.99 |
| 615_R | 643_G | 1.482 | 0.99 |
| 325_R | 749_E | 1.478 | 0.99 |
| 33_L | 144_D | 1.478 | 0.99 |
| 155_V | 488_S | 1.472 | 0.99 |
| 947_I | 957_F | 1.471 | 0.99 |
| 692_Q | 715_E | 1.460 | 0.99 |
| 794_W | 944_H | 1.457 | 0.99 |
| 9_T | 166_L | 1.455 | 0.99 |
| 547_S | 553_G | 1.453 | 0.99 |
| 29_V | 38_H | 1.446 | 0.99 |
| 25_T | 132_A | 1.443 | 0.99 |
| 7_K | 15_Y | 1.433 | 0.99 |
| 412_E | 415_T | 1.429 | 0.99 |
| 716_I | 733_M | 1.427 | 0.99 |
| 690_Y | 693_S | 1.426 | 0.99 |
| 26_P | 30_K | 1.420 | 0.99 |
| 134_R | 138_Q | 1.414 | 0.99 |
| 654_T | 657_E | 1.414 | 0.99 |
| 537_M | 545_I | 1.405 | 0.99 |
| 629_K | 633_I | 1.400 | 0.99 |
| 334_R | 731_S | 1.399 | 0.99 |
| 13_L | 18_V | 1.396 | 0.99 |
| 46_G | 117_E | 1.392 | 0.99 |
| 482_E | 499_S | 1.392 | 0.99 |
| 600_L | 638_R | 1.381 | 0.99 |
| 661_L | 669_A | 1.378 | 0.99 |
| 363_V | 448_L | 1.378 | 0.99 |
| 625_T | 632_A | 1.377 | 0.99 |
| 331_A | 746_A | 1.375 | 0.99 |
| 204_K | 231_E | 1.374 | 0.99 |
| 448_L | 597_V | 1.370 | 0.99 |
| 498_C | 513_F | 1.369 | 0.99 |
| 53_V | 57_F | 1.365 | 0.99 |
| 492_K | 517_A | 1.357 | 0.99 |
| 345_T | 699_A | 1.357 | 0.99 |
| 174_R | 188_I | 1.357 | 0.99 |
| 365_K | 554_T | 1.355 | 0.99 |
| 158_K | 729_T | 1.355 | 0.99 |
| 7_K | 11_E | 1.354 | 0.99 |
| 636_C | 641_I | 1.354 | 0.99 |
| 8_S | 12_C | 1.351 | 0.99 |
| 349_C | 624_I | 1.351 | 0.99 |
| 330_N | 736_A | 1.350 | 0.99 |
| 688_V | 698_T | 1.349 | 0.99 |
| 623_M | 675_C | 1.348 | 0.99 |
| 177_Q | 189_K | 1.348 | 0.99 |
| 902_S | 948_L | 1.342 | 0.98 |
| 906_T | 941_M | 1.340 | 0.98 |
| 140_I | 145_I | 1.337 | 0.98 |
| 968_L | 972_K | 1.337 | 0.98 |
| 527_Y | 536_P | 1.336 | 0.98 |
| 330_N | 737_D | 1.332 | 0.98 |
| 844_V | 907_I | 1.326 | 0.98 |
| 552_W | 556_R | 1.323 | 0.98 |
| 385_T | 396_L | 1.322 | 0.98 |
| 982_E | 989_R | 1.322 | 0.98 |
| 525_C | 565_A | 1.319 | 0.98 |
| 20_E | 166_L | 1.308 | 0.98 |
| 32_H | 36_Y | 1.306 | 0.98 |
| 614_C | 621_V | 1.306 | 0.98 |
| 161_A | 223_V | 1.304 | 0.98 |
| 689_E | 693_S | 1.304 | 0.98 |
| 114_N | 117_E | 1.301 | 0.98 |
| 481_K | 484_T | 1.294 | 0.98 |
| 497_Y | 512_M | 1.291 | 0.98 |
| 389_Y | 393_G | 1.290 | 0.98 |
| 556_R | 630_G | 1.287 | 0.98 |
| 539_G | 543_E | 1.287 | 0.98 |
| 613_L | 616_D | 1.285 | 0.98 |
| 632_A | 677_A | 1.284 | 0.98 |
| 164_R | 207_M | 1.284 | 0.98 |
| 110_R | 114_N | 1.280 | 0.98 |
| 614_C | 740_F | 1.277 | 0.98 |
| 9_T | 12_C | 1.276 | 0.98 |
| 53_V | 102_A | 1.274 | 0.98 |
| 159_V | 208_L | 1.273 | 0.98 |
| 703_D | 706_N | 1.273 | 0.98 |
| 351_D | 355_T | 1.271 | 0.98 |
| 653_Y | 658_F | 1.266 | 0.98 |
| 166_L | 222_I | 1.266 | 0.98 |
| 521_V | 565_A | 1.265 | 0.98 |
| 945_F | 949_Y | 1.264 | 0.98 |
| 848_T | 900_A | 1.261 | 0.97 |
| 558_T | 634_A | 1.259 | 0.97 |
| 418_A | 449_V | 1.256 | 0.97 |
| 949_Y | 959_L | 1.256 | 0.97 |
| 53_V | 103_I | 1.255 | 0.97 |
| 71_I | 296_F | 1.253 | 0.97 |
| 29_V | 32_H | 1.253 | 0.97 |
| 491_R | 495_S | 1.247 | 0.97 |
| 417_C | 597_V | 1.245 | 0.97 |
| 365_K | 559_L | 1.244 | 0.97 |
| 949_Y | 961_A | 1.243 | 0.97 |
| 164_R | 222_I | 1.243 | 0.97 |
| 330_N | 742_T | 1.239 | 0.97 |
| 55_E | 58_E | 1.236 | 0.97 |
| 946_L | 953_L | 1.234 | 0.97 |
| 27_D | 30_K | 1.234 | 0.97 |
| 324_R | 328_K | 1.232 | 0.97 |
| 127_G | 142_A | 1.228 | 0.97 |
| 511_K | 566_T | 1.216 | 0.97 |
| 367_F | 554_T | 1.206 | 0.96 |
| 56_Q | 105_G | 1.204 | 0.96 |
| 624_I | 700_M | 1.204 | 0.96 |
| 543_E | 546_L | 1.204 | 0.96 |
| 363_V | 599_M | 1.203 | 0.96 |
| 33_L | 36_Y | 1.203 | 0.96 |
| 416_I | 564_L | 1.199 | 0.96 |
| 676_F | 691_L | 1.198 | 0.96 |
| 737_D | 742_T | 1.198 | 0.96 |
| 443_T | 447_T | 1.197 | 0.96 |
| 553_G | 557_D | 1.196 | 0.96 |
| 633_I | 642_F | 1.193 | 0.96 |
| 322_G | 753_I | 1.193 | 0.96 |
| 623_M | 636_C | 1.188 | 0.96 |
| 568_D | 592_T | 1.188 | 0.96 |
| 528_V | 535_V | 1.188 | 0.96 |
| 621_V | 740_F | 1.183 | 0.96 |
| 697_I | 824_P | 1.182 | 0.96 |
| 423_S | 446_T | 1.182 | 0.96 |
| 10_E | 14_A | 1.178 | 0.96 |
| 388_T | 393_G | 1.178 | 0.96 |
| 421_N | 445_L | 1.173 | 0.96 |
| 485_L | 495_S | 1.172 | 0.96 |
| 954_P | 959_L | 1.172 | 0.96 |
| 610_S | 741_S | 1.169 | 0.96 |
| 964_L | 968_L | 1.168 | 0.96 |
| 720_M | 723_G | 1.164 | 0.95 |
| 73_F | 95_L | 1.159 | 0.95 |
| 764_L | 804_A | 1.158 | 0.95 |
| 768_N | 800_D | 1.155 | 0.95 |
| 356_L | 639_I | 1.155 | 0.95 |
| 607_V | 740_F | 1.154 | 0.95 |
| 948_L | 959_L | 1.148 | 0.95 |
| 367_F | 550_K | 1.148 | 0.95 |
| 725_A | 728_K | 1.148 | 0.95 |
| 92_F | 96_L | 1.145 | 0.95 |
| 557_D | 638_R | 1.144 | 0.95 |
| 771_E | 908_E | 1.141 | 0.95 |
| 788_I | 958_K | 1.140 | 0.95 |
| 934_L | 938_C | 1.137 | 0.95 |
| 512_M | 591_L | 1.137 | 0.95 |
| 40_E | 43_A | 1.136 | 0.95 |
| 246_K | 251_Q | 1.136 | 0.95 |
| 804_A | 808_G | 1.133 | 0.94 |
| 349_C | 691_L | 1.132 | 0.94 |
| 653_Y | 673_A | 1.130 | 0.94 |
| 770_G | 845_G | 1.128 | 0.94 |
| 445_L | 597_V | 1.127 | 0.94 |
| 641_I | 675_C | 1.122 | 0.94 |
| 128_K | 139_R | 1.120 | 0.94 |
| 175_V | 219_A | 1.120 | 0.94 |
| 823_S | 826_E | 1.118 | 0.94 |
| 810_N | 813_D | 1.115 | 0.94 |
| 629_K | 657_E | 1.111 | 0.94 |
| 547_S | 552_W | 1.110 | 0.94 |
| 896_P | 900_A | 1.110 | 0.94 |
| 520_G | 524_R | 1.104 | 0.93 |
| 366_M | 448_L | 1.103 | 0.93 |
| 481_K | 498_C | 1.102 | 0.93 |
| 140_I | 144_D | 1.102 | 0.93 |
| 27_D | 132_A | 1.099 | 0.93 |
| 512_M | 587_Y | 1.096 | 0.93 |
| 899_M | 970_V | 1.094 | 0.93 |
| 938_C | 942_S | 1.093 | 0.93 |
| 128_K | 157_D | 1.092 | 0.93 |
| 623_M | 632_A | 1.091 | 0.93 |
| 382_F | 395_V | 1.088 | 0.93 |
| 489_R | 492_K | 1.085 | 0.93 |
| 238_Q | 682_S | 1.080 | 0.92 |
| 334_R | 734_V | 1.078 | 0.92 |
| 346_S | 691_L | 1.077 | 0.92 |
| 983_I | 987_I | 1.071 | 0.92 |
| 43_A | 117_E | 1.071 | 0.92 |
| 51_E | 55_E | 1.065 | 0.92 |
| 810_N | 916_L | 1.064 | 0.92 |
| 60_L | 257_G | 1.064 | 0.92 |
| 421_N | 446_T | 1.062 | 0.92 |
| 679_V | 683_H | 1.059 | 0.91 |
| 986_F | 989_R | 1.058 | 0.91 |
| 225_T | 229_S | 1.055 | 0.91 |
| 894_P | 897_M | 1.054 | 0.91 |
| 799_T | 908_E | 1.054 | 0.91 |
| 11_E | 14_A | 1.049 | 0.91 |
| 447_T | 451_K | 1.043 | 0.91 |
| 129_V | 138_Q | 1.042 | 0.91 |
| 607_V | 741_S | 1.039 | 0.90 |
| 697_I | 715_E | 1.038 | 0.90 |
| 113_E | 334_R | 1.037 | 0.90 |
| 658_F | 683_H | 1.036 | 0.90 |
| 519_E | 628_N | 1.036 | 0.90 |
| 142_A | 145_I | 1.035 | 0.90 |
| 527_Y | 590_D | 1.034 | 0.90 |
| 778_T | 786_A | 1.034 | 0.90 |
| 3_A | 6_S | 1.032 | 0.90 |
| 258_E | 262_K | 1.032 | 0.90 |
| 981_D | 984_L | 1.031 | 0.90 |
| 663_L | 689_E | 1.030 | 0.90 |
| 442_E | 494_M | 1.029 | 0.90 |
| 671_R | 696_E | 1.027 | 0.90 |
| 329_K | 749_E | 1.027 | 0.90 |
| 642_F | 675_C | 1.026 | 0.90 |
| 688_V | 700_M | 1.023 | 0.89 |
| 201_N | 204_K | 1.021 | 0.89 |
| 908_E | 911_N | 1.020 | 0.89 |
| 518_P | 551_E | 1.019 | 0.89 |
| 96_L | 100_A | 1.019 | 0.89 |
| 848_T | 903_V | 1.018 | 0.89 |
| 921_S | 982_E | 1.017 | 0.89 |
| 4_A | 16_F | 1.017 | 0.89 |
| 363_V | 597_V | 1.014 | 0.89 |
| 214_I | 219_A | 1.013 | 0.89 |
| 665_E | 668_E | 1.010 | 0.89 |
| 48_S | 54_I | 1.008 | 0.89 |
| 718_I | 743_I | 1.007 | 0.88 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 3ar4A | 1 | 0.998 | 100 | 0.157 | Contact Map |
| 3ixzA | 1 | 0.9437 | 100 | 0.214 | Contact Map |
| 2zxeA | 1 | 0.9427 | 100 | 0.214 | Contact Map |
| 1mhsA | 2 | 0.8229 | 100 | 0.313 | Contact Map |
| 3b8cA | 2 | 0.834 | 100 | 0.32 | Contact Map |
| 4bbjA | 1 | 0.6328 | 100 | 0.592 | Contact Map |
| 4umwA | 1 | 0.5885 | 100 | 0.599 | Contact Map |
| 3j09A | 2 | 0.6167 | 100 | 0.608 | Contact Map |
| 3j08A | 2 | 0.6268 | 100 | 0.613 | Contact Map |
| 3a1cA | 2 | 0.2746 | 100 | 0.87 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)