| MalT |
| ID: | 1426770552 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 901 (889) | ||
| Sequences: | 3773 (3352.9) | ||
| Seq/Len: | 4.244 | ||
| Nf(neff/√len): | 112.5 |
Jackhmmer Results: (2015_01_07)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 4.244).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 665_D | 668_A | 5.314 | 1.00 |
| 585_R | 588_E | 5.245 | 1.00 |
| 624_D | 627_N | 5.125 | 1.00 |
| 703_E | 706_P | 4.234 | 1.00 |
| 464_N | 467_E | 4.109 | 1.00 |
| 344_H | 363_H | 3.930 | 1.00 |
| 424_R | 427_E | 3.877 | 1.00 |
| 49_I | 158_L | 3.751 | 1.00 |
| 543_F | 546_T | 3.576 | 1.00 |
| 503_E | 506_R | 3.566 | 1.00 |
| 871_I | 875_Y | 3.511 | 1.00 |
| 191_A | 222_L | 3.326 | 1.00 |
| 264_D | 300_E | 3.303 | 1.00 |
| 795_A | 798_I | 3.190 | 1.00 |
| 847_I | 856_I | 3.180 | 1.00 |
| 93_C | 96_M | 3.026 | 1.00 |
| 792_Q | 795_A | 3.025 | 1.00 |
| 590_E | 622_R | 2.892 | 1.00 |
| 851_Y | 859_E | 2.785 | 1.00 |
| 187_T | 190_E | 2.724 | 1.00 |
| 799_L | 802_I | 2.719 | 1.00 |
| 795_A | 799_L | 2.664 | 1.00 |
| 195_F | 226_A | 2.652 | 1.00 |
| 53_A | 126_V | 2.584 | 1.00 |
| 839_R | 842_Q | 2.535 | 1.00 |
| 361_I | 364_A | 2.511 | 1.00 |
| 743_R | 746_D | 2.509 | 1.00 |
| 277_L | 347_A | 2.492 | 1.00 |
| 92_I | 97_A | 2.490 | 1.00 |
| 27_S | 55_G | 2.479 | 1.00 |
| 130_Y | 157_V | 2.469 | 1.00 |
| 795_A | 806_H | 2.431 | 1.00 |
| 798_I | 802_I | 2.390 | 1.00 |
| 715_N | 734_L | 2.373 | 1.00 |
| 657_V | 673_L | 2.341 | 1.00 |
| 841_W | 845_G | 2.320 | 1.00 |
| 798_I | 806_H | 2.261 | 1.00 |
| 795_A | 803_N | 2.249 | 1.00 |
| 799_L | 803_N | 2.248 | 1.00 |
| 274_S | 320_Y | 2.246 | 1.00 |
| 128_D | 158_L | 2.229 | 1.00 |
| 580_L | 592_S | 2.152 | 1.00 |
| 552_E | 576_R | 2.135 | 1.00 |
| 792_Q | 803_N | 2.129 | 1.00 |
| 93_C | 97_A | 2.125 | 1.00 |
| 188_H | 209_S | 2.122 | 1.00 |
| 818_V | 822_L | 2.113 | 1.00 |
| 844_L | 874_L | 2.100 | 1.00 |
| 26_L | 52_W | 2.095 | 1.00 |
| 360_A | 364_A | 2.089 | 1.00 |
| 619_S | 624_D | 2.079 | 1.00 |
| 134_T | 137_V | 2.062 | 1.00 |
| 105_L | 108_L | 2.055 | 1.00 |
| 149_Q | 153_L | 2.039 | 1.00 |
| 594_R | 615_L | 2.038 | 1.00 |
| 795_A | 807_R | 2.028 | 1.00 |
| 580_L | 585_R | 2.014 | 1.00 |
| 795_A | 804_Q | 2.009 | 1.00 |
| 840_E | 877_K | 1.993 | 1.00 |
| 23_L | 51_Q | 1.991 | 1.00 |
| 787_L | 791_E | 1.988 | 1.00 |
| 52_W | 156_V | 1.959 | 1.00 |
| 783_Q | 786_T | 1.948 | 1.00 |
| 191_A | 212_C | 1.942 | 1.00 |
| 267_T | 300_E | 1.936 | 1.00 |
| 636_E | 656_R | 1.932 | 1.00 |
| 92_I | 96_M | 1.929 | 1.00 |
| 712_E | 734_L | 1.906 | 1.00 |
| 795_A | 805_H | 1.888 | 1.00 |
| 629_R | 663_T | 1.874 | 1.00 |
| 62_Y | 66_E | 1.873 | 1.00 |
| 767_F | 771_G | 1.870 | 1.00 |
| 660_W | 668_A | 1.858 | 1.00 |
| 89_H | 93_C | 1.851 | 1.00 |
| 794_R | 798_I | 1.840 | 1.00 |
| 436_E | 455_R | 1.838 | 1.00 |
| 849_S | 859_E | 1.818 | 1.00 |
| 792_Q | 799_L | 1.813 | 1.00 |
| 813_F | 818_V | 1.812 | 1.00 |
| 345_R | 349_E | 1.811 | 1.00 |
| 268_R | 272_L | 1.804 | 1.00 |
| 795_A | 802_I | 1.793 | 1.00 |
| 535_S | 551_Q | 1.792 | 1.00 |
| 264_D | 267_T | 1.777 | 1.00 |
| 660_W | 665_D | 1.772 | 1.00 |
| 276_I | 329_R | 1.768 | 0.99 |
| 587_D | 622_R | 1.765 | 0.99 |
| 90_C | 93_C | 1.757 | 0.99 |
| 619_S | 627_N | 1.755 | 0.99 |
| 89_H | 92_I | 1.755 | 0.99 |
| 590_E | 594_R | 1.747 | 0.99 |
| 865_T | 872_R | 1.735 | 0.99 |
| 548_W | 583_W | 1.727 | 0.99 |
| 61_W | 66_E | 1.723 | 0.99 |
| 869_T | 873_N | 1.720 | 0.99 |
| 728_N | 758_A | 1.720 | 0.99 |
| 788_P | 792_Q | 1.718 | 0.99 |
| 862_V | 867_I | 1.713 | 0.99 |
| 597_I | 615_L | 1.710 | 0.99 |
| 47_T | 51_Q | 1.705 | 0.99 |
| 49_I | 126_V | 1.703 | 0.99 |
| 619_S | 631_Q | 1.694 | 0.99 |
| 814_D | 822_L | 1.692 | 0.99 |
| 182_Q | 186_F | 1.684 | 0.99 |
| 16_T | 47_T | 1.678 | 0.99 |
| 580_L | 588_E | 1.677 | 0.99 |
| 577_A | 593_A | 1.669 | 0.99 |
| 596_G | 611_C | 1.667 | 0.99 |
| 660_W | 672_W | 1.661 | 0.99 |
| 803_N | 806_H | 1.657 | 0.99 |
| 37_I | 49_I | 1.657 | 0.99 |
| 360_A | 363_H | 1.652 | 0.99 |
| 39_S | 43_Y | 1.648 | 0.99 |
| 333_Q | 337_A | 1.627 | 0.99 |
| 875_Y | 880_V | 1.617 | 0.99 |
| 802_I | 806_H | 1.608 | 0.99 |
| 814_D | 818_V | 1.602 | 0.99 |
| 325_G | 329_R | 1.601 | 0.99 |
| 495_G | 511_M | 1.598 | 0.99 |
| 89_H | 97_A | 1.577 | 0.99 |
| 182_Q | 185_A | 1.575 | 0.99 |
| 593_A | 615_L | 1.569 | 0.99 |
| 332_C | 343_I | 1.556 | 0.98 |
| 548_W | 552_E | 1.545 | 0.98 |
| 456_A | 472_A | 1.543 | 0.98 |
| 794_R | 797_R | 1.539 | 0.98 |
| 276_I | 343_I | 1.535 | 0.98 |
| 755_L | 770_E | 1.534 | 0.98 |
| 802_I | 807_R | 1.534 | 0.98 |
| 77_Y | 133_I | 1.532 | 0.98 |
| 661_Q | 669_A | 1.523 | 0.98 |
| 188_H | 212_C | 1.520 | 0.98 |
| 538_L | 550_T | 1.519 | 0.98 |
| 267_T | 301_I | 1.517 | 0.98 |
| 271_L | 301_I | 1.517 | 0.98 |
| 625_L | 663_T | 1.508 | 0.98 |
| 811_A | 815_E | 1.503 | 0.98 |
| 94_E | 97_A | 1.499 | 0.98 |
| 881_A | 885_D | 1.498 | 0.98 |
| 224_L | 258_E | 1.488 | 0.98 |
| 751_L | 774_M | 1.485 | 0.98 |
| 810_F | 813_F | 1.484 | 0.98 |
| 802_I | 805_H | 1.484 | 0.98 |
| 854_E | 864_A | 1.481 | 0.98 |
| 272_L | 339_E | 1.481 | 0.98 |
| 50_S | 63_S | 1.480 | 0.98 |
| 378_L | 410_Q | 1.479 | 0.98 |
| 792_Q | 798_I | 1.477 | 0.98 |
| 804_Q | 807_R | 1.475 | 0.98 |
| 59_I | 62_Y | 1.475 | 0.98 |
| 798_I | 801_E | 1.474 | 0.98 |
| 732_L | 736_Q | 1.473 | 0.98 |
| 748_Q | 752_L | 1.468 | 0.97 |
| 844_L | 886_A | 1.463 | 0.97 |
| 601_S | 634_R | 1.460 | 0.97 |
| 753_D | 757_L | 1.460 | 0.97 |
| 798_I | 803_N | 1.455 | 0.97 |
| 20_E | 190_E | 1.451 | 0.97 |
| 813_F | 817_F | 1.451 | 0.97 |
| 852_S | 855_Q | 1.444 | 0.97 |
| 632_L | 656_R | 1.443 | 0.97 |
| 51_Q | 54_A | 1.442 | 0.97 |
| 468_A | 472_A | 1.442 | 0.97 |
| 429_N | 433_A | 1.440 | 0.97 |
| 419_M | 427_E | 1.439 | 0.97 |
| 519_R | 527_A | 1.436 | 0.97 |
| 698_Q | 706_P | 1.430 | 0.97 |
| 41_A | 160_R | 1.430 | 0.97 |
| 548_W | 580_L | 1.428 | 0.97 |
| 273_K | 347_A | 1.423 | 0.97 |
| 774_M | 778_L | 1.420 | 0.97 |
| 92_I | 98_Q | 1.417 | 0.97 |
| 329_R | 340_L | 1.415 | 0.97 |
| 181_S | 185_A | 1.414 | 0.97 |
| 538_L | 546_T | 1.412 | 0.97 |
| 21_R | 24_A | 1.406 | 0.96 |
| 798_I | 805_H | 1.405 | 0.96 |
| 362_H | 366_A | 1.404 | 0.96 |
| 444_E | 447_M | 1.402 | 0.96 |
| 90_C | 97_A | 1.402 | 0.96 |
| 796_Q | 800_R | 1.401 | 0.96 |
| 732_L | 766_H | 1.400 | 0.96 |
| 627_N | 631_Q | 1.391 | 0.96 |
| 398_K | 427_E | 1.387 | 0.96 |
| 59_I | 124_Y | 1.386 | 0.96 |
| 880_V | 889_H | 1.381 | 0.96 |
| 889_H | 892_Q | 1.380 | 0.96 |
| 708_E | 712_E | 1.378 | 0.96 |
| 181_S | 184_L | 1.375 | 0.96 |
| 183_Q | 186_F | 1.375 | 0.96 |
| 799_L | 804_Q | 1.374 | 0.96 |
| 586_L | 622_R | 1.372 | 0.96 |
| 62_Y | 70_Q | 1.366 | 0.96 |
| 89_H | 96_M | 1.363 | 0.96 |
| 704_F | 708_E | 1.359 | 0.95 |
| 792_Q | 804_Q | 1.359 | 0.95 |
| 482_G | 487_R | 1.354 | 0.95 |
| 866_T | 870_H | 1.352 | 0.95 |
| 470_R | 474_L | 1.351 | 0.95 |
| 144_F | 148_H | 1.348 | 0.95 |
| 389_E | 392_L | 1.348 | 0.95 |
| 77_Y | 80_A | 1.347 | 0.95 |
| 408_N | 412_V | 1.345 | 0.95 |
| 130_Y | 133_I | 1.336 | 0.95 |
| 754_A | 770_E | 1.330 | 0.95 |
| 865_T | 868_K | 1.325 | 0.95 |
| 153_L | 158_L | 1.323 | 0.95 |
| 433_A | 455_R | 1.320 | 0.94 |
| 60_G | 64_L | 1.319 | 0.94 |
| 70_Q | 73_R | 1.311 | 0.94 |
| 243_L | 246_I | 1.307 | 0.94 |
| 586_L | 618_C | 1.300 | 0.94 |
| 126_V | 158_L | 1.299 | 0.94 |
| 711_L | 715_N | 1.297 | 0.94 |
| 743_R | 747_A | 1.294 | 0.94 |
| 817_F | 820_R | 1.292 | 0.94 |
| 342_E | 346_A | 1.289 | 0.93 |
| 97_A | 100_R | 1.286 | 0.93 |
| 269_H | 339_E | 1.284 | 0.93 |
| 192_K | 208_S | 1.284 | 0.93 |
| 210_R | 214_D | 1.283 | 0.93 |
| 393_L | 400_L | 1.283 | 0.93 |
| 272_L | 332_C | 1.280 | 0.93 |
| 211_I | 222_L | 1.279 | 0.93 |
| 666_K | 697_A | 1.277 | 0.93 |
| 844_L | 880_V | 1.276 | 0.93 |
| 190_E | 193_Q | 1.276 | 0.93 |
| 590_E | 615_L | 1.273 | 0.93 |
| 64_L | 80_A | 1.266 | 0.93 |
| 204_E | 207_E | 1.265 | 0.93 |
| 484_F | 487_R | 1.264 | 0.93 |
| 792_Q | 802_I | 1.264 | 0.93 |
| 698_Q | 703_E | 1.264 | 0.93 |
| 686_F | 691_W | 1.262 | 0.93 |
| 731_L | 753_D | 1.258 | 0.92 |
| 752_L | 774_M | 1.258 | 0.92 |
| 160_R | 321_H | 1.257 | 0.92 |
| 43_Y | 219_A | 1.252 | 0.92 |
| 263_V | 267_T | 1.251 | 0.92 |
| 685_H | 688_Q | 1.250 | 0.92 |
| 810_F | 817_F | 1.250 | 0.92 |
| 73_R | 76_S | 1.250 | 0.92 |
| 299_E | 303_R | 1.249 | 0.92 |
| 753_D | 756_K | 1.243 | 0.92 |
| 288_V | 350_S | 1.240 | 0.92 |
| 90_C | 96_M | 1.240 | 0.92 |
| 695_A | 699_I | 1.239 | 0.92 |
| 193_Q | 197_C | 1.233 | 0.91 |
| 62_Y | 65_D | 1.232 | 0.91 |
| 612_L | 634_R | 1.231 | 0.91 |
| 276_I | 347_A | 1.229 | 0.91 |
| 459_A | 464_N | 1.227 | 0.91 |
| 112_L | 116_L | 1.227 | 0.91 |
| 473_K | 494_L | 1.226 | 0.91 |
| 671_N | 675_H | 1.226 | 0.91 |
| 746_D | 749_R | 1.225 | 0.91 |
| 803_N | 807_R | 1.223 | 0.91 |
| 667_A | 701_L | 1.223 | 0.91 |
| 216_S | 322_P | 1.221 | 0.91 |
| 799_L | 805_H | 1.220 | 0.91 |
| 576_R | 580_L | 1.219 | 0.91 |
| 77_Y | 81_A | 1.215 | 0.91 |
| 629_R | 660_W | 1.212 | 0.90 |
| 128_D | 131_H | 1.212 | 0.90 |
| 348_A | 364_A | 1.210 | 0.90 |
| 181_S | 186_F | 1.209 | 0.90 |
| 792_Q | 806_H | 1.205 | 0.90 |
| 91_A | 94_E | 1.204 | 0.90 |
| 36_L | 159_S | 1.203 | 0.90 |
| 817_F | 822_L | 1.202 | 0.90 |
| 844_L | 890_A | 1.199 | 0.90 |
| 818_V | 821_L | 1.194 | 0.90 |
| 491_T | 510_L | 1.193 | 0.89 |
| 506_R | 509_A | 1.189 | 0.89 |
| 538_L | 543_F | 1.185 | 0.89 |
| 60_G | 121_S | 1.182 | 0.89 |
| 556_Q | 560_E | 1.181 | 0.89 |
| 765_S | 769_I | 1.181 | 0.89 |
| 882_H | 885_D | 1.179 | 0.89 |
| 40_P | 43_Y | 1.179 | 0.89 |
| 358_S | 364_A | 1.177 | 0.89 |
| 847_I | 874_L | 1.174 | 0.88 |
| 747_A | 751_L | 1.173 | 0.88 |
| 806_H | 809_K | 1.171 | 0.88 |
| 128_D | 322_P | 1.169 | 0.88 |
| 64_L | 67_G | 1.169 | 0.88 |
| 758_A | 767_F | 1.169 | 0.88 |
| 653_N | 672_W | 1.168 | 0.88 |
| 284_L | 350_S | 1.168 | 0.88 |
| 813_F | 822_L | 1.167 | 0.88 |
| 135_N | 138_I | 1.165 | 0.88 |
| 629_R | 633_N | 1.165 | 0.88 |
| 593_A | 618_C | 1.163 | 0.88 |
| 873_N | 876_Q | 1.162 | 0.88 |
| 127_I | 142_M | 1.160 | 0.88 |
| 352_M | 372_M | 1.154 | 0.87 |
| 618_C | 622_R | 1.152 | 0.87 |
| 452_N | 471_L | 1.150 | 0.87 |
| 853_N | 868_K | 1.149 | 0.87 |
| 670_A | 701_L | 1.149 | 0.87 |
| 370_A | 377_L | 1.144 | 0.87 |
| 37_I | 181_S | 1.143 | 0.87 |
| 799_L | 807_R | 1.142 | 0.87 |
| 47_T | 223_Q | 1.142 | 0.87 |
| 220_T | 321_H | 1.140 | 0.86 |
| 847_I | 871_I | 1.139 | 0.86 |
| 515_E | 534_Q | 1.134 | 0.86 |
| 817_F | 821_L | 1.133 | 0.86 |
| 554_A | 557_L | 1.132 | 0.86 |
| 369_D | 372_M | 1.132 | 0.86 |
| 531_L | 553_K | 1.132 | 0.86 |
| 689_G | 692_R | 1.129 | 0.86 |
| 273_K | 339_E | 1.128 | 0.86 |
| 814_D | 817_F | 1.125 | 0.85 |
| 64_L | 69_N | 1.120 | 0.85 |
| 616_I | 655_V | 1.119 | 0.85 |
| 579_L | 583_W | 1.118 | 0.85 |
| 775_A | 782_I | 1.117 | 0.85 |
| 889_H | 893_L | 1.114 | 0.85 |
| 277_L | 280_M | 1.113 | 0.85 |
| 802_I | 810_F | 1.113 | 0.85 |
| 872_R | 876_Q | 1.113 | 0.85 |
| 854_E | 858_G | 1.112 | 0.85 |
| 559_N | 595_S | 1.111 | 0.84 |
| 807_R | 810_F | 1.111 | 0.84 |
| 731_L | 750_V | 1.109 | 0.84 |
| 415_Q | 419_M | 1.109 | 0.84 |
| 738_Y | 742_G | 1.109 | 0.84 |
| 333_Q | 339_E | 1.107 | 0.84 |
| 559_N | 569_H | 1.106 | 0.84 |
| 487_R | 491_T | 1.105 | 0.84 |
| 508_L | 541_Q | 1.103 | 0.84 |
| 474_L | 477_E | 1.103 | 0.84 |
| 685_H | 690_Q | 1.103 | 0.84 |
| 757_L | 760_R | 1.101 | 0.84 |
| 89_H | 94_E | 1.101 | 0.84 |
| 711_L | 730_N | 1.099 | 0.84 |
| 494_L | 498_L | 1.098 | 0.84 |
| 472_A | 476_L | 1.096 | 0.83 |
| 61_W | 65_D | 1.096 | 0.83 |
| 589_A | 618_C | 1.093 | 0.83 |
| 487_R | 513_Q | 1.093 | 0.83 |
| 871_I | 886_A | 1.092 | 0.83 |
| 795_A | 801_E | 1.089 | 0.83 |
| 35_A | 154_T | 1.084 | 0.82 |
| 358_S | 383_S | 1.084 | 0.82 |
| 364_A | 372_M | 1.083 | 0.82 |
| 449_A | 475_A | 1.082 | 0.82 |
| 60_G | 123_L | 1.081 | 0.82 |
| 656_R | 672_W | 1.080 | 0.82 |
| 738_Y | 750_V | 1.078 | 0.82 |
| 427_E | 431_L | 1.077 | 0.82 |
| 727_L | 731_L | 1.072 | 0.81 |
| 498_L | 510_L | 1.072 | 0.81 |
| 60_G | 66_E | 1.069 | 0.81 |
| 141_S | 145_F | 1.068 | 0.81 |
| 45_K | 220_T | 1.066 | 0.81 |
| 29_A | 35_A | 1.064 | 0.81 |
| 179_I | 186_F | 1.064 | 0.81 |
| 300_E | 304_Q | 1.062 | 0.81 |
| 419_M | 431_L | 1.062 | 0.81 |
| 694_I | 698_Q | 1.062 | 0.81 |
| 657_V | 693_N | 1.062 | 0.81 |
| 576_R | 592_S | 1.061 | 0.81 |
| 76_S | 80_A | 1.060 | 0.80 |
| 797_R | 801_E | 1.059 | 0.80 |
| 416_A | 435_A | 1.059 | 0.80 |
| 404_S | 407_E | 1.059 | 0.80 |
| 577_A | 589_A | 1.057 | 0.80 |
| 358_S | 363_H | 1.056 | 0.80 |
| 766_H | 769_I | 1.055 | 0.80 |
| 130_Y | 139_H | 1.054 | 0.80 |
| 265_L | 268_R | 1.053 | 0.80 |
| 220_T | 224_L | 1.052 | 0.80 |
| 64_L | 77_Y | 1.051 | 0.80 |
| 755_L | 767_F | 1.049 | 0.79 |
| 361_I | 373_L | 1.047 | 0.79 |
| 812_H | 816_N | 1.047 | 0.79 |
| 752_L | 756_K | 1.046 | 0.79 |
| 49_I | 128_D | 1.046 | 0.79 |
| 619_S | 622_R | 1.044 | 0.79 |
| 316_E | 320_Y | 1.043 | 0.79 |
| 37_I | 158_L | 1.043 | 0.79 |
| 371_L | 375_D | 1.041 | 0.79 |
| 535_S | 547_A | 1.041 | 0.79 |
| 449_A | 479_L | 1.040 | 0.79 |
| 593_A | 611_C | 1.039 | 0.79 |
| 130_Y | 159_S | 1.039 | 0.79 |
| 18_V | 22_L | 1.039 | 0.79 |
| 546_T | 549_E | 1.039 | 0.79 |
| 615_L | 631_Q | 1.035 | 0.78 |
| 53_A | 63_S | 1.035 | 0.78 |
| 590_E | 619_S | 1.034 | 0.78 |
| 512_Q | 516_Q | 1.034 | 0.78 |
| 270_F | 285_I | 1.031 | 0.78 |
| 590_E | 618_C | 1.031 | 0.78 |
| 71_Q | 81_A | 1.030 | 0.78 |
| 429_N | 462_D | 1.030 | 0.78 |
| 329_R | 344_H | 1.026 | 0.77 |
| 696_R | 699_I | 1.026 | 0.77 |
| 512_Q | 534_Q | 1.026 | 0.77 |
| 581_W | 586_L | 1.025 | 0.77 |
| 573_V | 595_S | 1.025 | 0.77 |
| 195_F | 222_L | 1.024 | 0.77 |
| 779_R | 817_F | 1.024 | 0.77 |
| 843_V | 870_H | 1.021 | 0.77 |
| 104_S | 112_L | 1.020 | 0.77 |
| 273_K | 343_I | 1.017 | 0.76 |
| 659_Y | 663_T | 1.017 | 0.76 |
| 66_E | 70_Q | 1.017 | 0.76 |
| 548_W | 576_R | 1.016 | 0.76 |
| 552_E | 556_Q | 1.016 | 0.76 |
| 756_K | 759_N | 1.015 | 0.76 |
| 554_A | 572_L | 1.014 | 0.76 |
| 872_R | 875_Y | 1.013 | 0.76 |
| 865_T | 869_T | 1.010 | 0.76 |
| 639_L | 643_K | 1.009 | 0.76 |
| 656_R | 660_W | 1.009 | 0.76 |
| 105_L | 109_F | 1.007 | 0.75 |
| 750_V | 753_D | 1.007 | 0.75 |
| 774_M | 777_Q | 1.006 | 0.75 |
| 633_N | 656_R | 1.006 | 0.75 |
| 415_Q | 431_L | 1.006 | 0.75 |
| 542_G | 725_S | 1.006 | 0.75 |
| 275_A | 329_R | 1.006 | 0.75 |
| 761_T | 764_I | 1.005 | 0.75 |
| 733_L | 737_L | 1.004 | 0.75 |
| 51_Q | 55_G | 1.002 | 0.75 |
| 93_C | 98_Q | 1.000 | 0.75 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 1z6tA | 4 | 0.4772 | 100 | 0.756 | Contact Map |
| 2a5yB | 2 | 0.384 | 100 | 0.806 | Contact Map |
| 1hz4A | 1 | 0.4062 | 100 | 0.819 | Contact Map |
| 2fnaA | 2 | 0.343 | 99.9 | 0.841 | Contact Map |
| 2qenA | 1 | 0.3507 | 99.9 | 0.858 | Contact Map |
| 3c57A | 2 | 0.0566 | 99.9 | 0.86 | Contact Map |
| 2rnjA | 1 | 0.0744 | 99.9 | 0.861 | Contact Map |
| 1fnnA | 2 | 0.3541 | 99.8 | 0.865 | Contact Map |
| 3c3wA | 2 | 0.2331 | 99.8 | 0.865 | Contact Map |
| 3sf4A | 3 | 0.3751 | 99.8 | 0.871 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)