| Env |
| ID: | 1413869124 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 856 (843) | ||
| Sequences: | 4806 (370.9) | ||
| Seq/Len: | 5.701 | ||
| Nf(neff/√len): | 12.8 |
HHblits Results: (2013_03)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 5.701).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 283_T | 453_L | 4.498 | 1.00 |
| 632_D | 636_N | 3.840 | 1.00 |
| 502_K | 607_A | 3.535 | 1.00 |
| 747_R | 758_D | 3.477 | 1.00 |
| 330_H | 334_S | 3.158 | 1.00 |
| 658_Q | 662_E | 3.020 | 1.00 |
| 825_G | 829_V | 2.833 | 1.00 |
| 275_V | 278_T | 2.668 | 1.00 |
| 755_L | 758_D | 2.532 | 1.00 |
| 620_E | 624_N | 2.446 | 1.00 |
| 567_Q | 629_M | 2.375 | 1.00 |
| 97_K | 275_V | 2.361 | 1.00 |
| 348_K | 351_E | 2.201 | 1.00 |
| 332_N | 336_A | 2.190 | 1.00 |
| 65_V | 208_V | 2.106 | 1.00 |
| 746_I | 758_D | 2.094 | 1.00 |
| 159_F | 174_A | 2.077 | 1.00 |
| 230_N | 240_T | 2.064 | 1.00 |
| 85_V | 229_N | 2.060 | 1.00 |
| 659_E | 662_E | 2.037 | 1.00 |
| 360_I | 467_I | 2.034 | 1.00 |
| 722_P | 726_G | 2.011 | 1.00 |
| 232_T | 268_E | 1.991 | 1.00 |
| 641_L | 644_S | 1.983 | 1.00 |
| 815_L | 818_T | 1.975 | 1.00 |
| 167_G | 192_K | 1.969 | 1.00 |
| 797_W | 800_L | 1.941 | 1.00 |
| 817_A | 821_A | 1.933 | 1.00 |
| 700_A | 758_D | 1.922 | 1.00 |
| 630_E | 633_R | 1.913 | 1.00 |
| 17_W | 20_M | 1.911 | 1.00 |
| 354_G | 357_K | 1.876 | 1.00 |
| 25_L | 31_T | 1.875 | 1.00 |
| 12_R | 20_M | 1.858 | 1.00 |
| 232_T | 236_T | 1.854 | 1.00 |
| 849_Q | 852_E | 1.827 | 1.00 |
| 11_W | 21_L | 1.813 | 1.00 |
| 211_E | 379_G | 1.775 | 1.00 |
| 293_E | 337_K | 1.766 | 1.00 |
| 308_R | 315_R | 1.759 | 1.00 |
| 46_K | 49_T | 1.755 | 1.00 |
| 790_W | 794_K | 1.721 | 1.00 |
| 381_E | 385_C | 1.716 | 1.00 |
| 655_K | 658_Q | 1.715 | 1.00 |
| 360_I | 465_S | 1.712 | 1.00 |
| 848_R | 852_E | 1.690 | 1.00 |
| 21_L | 25_L | 1.684 | 1.00 |
| 231_K | 267_E | 1.681 | 1.00 |
| 816_N | 824_E | 1.673 | 1.00 |
| 21_L | 26_M | 1.665 | 1.00 |
| 114_Q | 202_T | 1.659 | 1.00 |
| 726_G | 736_E | 1.647 | 1.00 |
| 277_F | 352_Q | 1.646 | 1.00 |
| 849_Q | 855_L | 1.638 | 1.00 |
| 496_V | 646_I | 1.629 | 0.99 |
| 270_V | 287_Q | 1.627 | 0.99 |
| 92_N | 630_E | 1.617 | 0.99 |
| 46_K | 636_N | 1.614 | 0.99 |
| 850_G | 855_L | 1.601 | 0.99 |
| 564_H | 567_Q | 1.596 | 0.99 |
| 269_E | 348_K | 1.595 | 0.99 |
| 223_F | 655_K | 1.595 | 0.99 |
| 290_T | 344_Q | 1.593 | 0.99 |
| 852_E | 855_L | 1.588 | 0.99 |
| 846_R | 849_Q | 1.580 | 0.99 |
| 92_N | 238_P | 1.577 | 0.99 |
| 721_L | 756_I | 1.566 | 0.99 |
| 378_C | 385_C | 1.562 | 0.99 |
| 270_V | 277_F | 1.558 | 0.99 |
| 198_T | 202_T | 1.556 | 0.99 |
| 287_Q | 291_S | 1.553 | 0.99 |
| 846_R | 852_E | 1.552 | 0.99 |
| 11_W | 26_M | 1.549 | 0.99 |
| 182_I | 192_K | 1.548 | 0.99 |
| 328_Q | 334_S | 1.538 | 0.99 |
| 837_C | 840_I | 1.537 | 0.99 |
| 740_R | 796_W | 1.537 | 0.99 |
| 325_N | 419_R | 1.536 | 0.99 |
| 22_L | 30_A | 1.525 | 0.99 |
| 824_E | 829_V | 1.522 | 0.99 |
| 756_I | 775_L | 1.521 | 0.99 |
| 275_V | 279_D | 1.514 | 0.99 |
| 833_V | 837_C | 1.510 | 0.99 |
| 49_T | 99_D | 1.507 | 0.99 |
| 836_A | 839_A | 1.502 | 0.99 |
| 47_E | 629_M | 1.500 | 0.99 |
| 23_G | 30_A | 1.499 | 0.99 |
| 425_N | 432_K | 1.486 | 0.99 |
| 471_G | 476_R | 1.483 | 0.99 |
| 369_P | 373_T | 1.482 | 0.99 |
| 378_C | 381_E | 1.480 | 0.99 |
| 12_R | 23_G | 1.479 | 0.99 |
| 12_R | 22_L | 1.479 | 0.99 |
| 223_F | 287_Q | 1.465 | 0.99 |
| 844_P | 848_R | 1.461 | 0.99 |
| 12_R | 30_A | 1.455 | 0.99 |
| 5_E | 21_L | 1.452 | 0.99 |
| 20_M | 26_M | 1.435 | 0.98 |
| 731_E | 736_E | 1.435 | 0.98 |
| 705_V | 732_G | 1.434 | 0.98 |
| 588_K | 646_I | 1.432 | 0.98 |
| 848_R | 855_L | 1.428 | 0.98 |
| 219_A | 225_I | 1.428 | 0.98 |
| 62_D | 65_V | 1.428 | 0.98 |
| 847_I | 855_L | 1.426 | 0.98 |
| 92_N | 633_R | 1.424 | 0.98 |
| 178_K | 195_S | 1.424 | 0.98 |
| 22_L | 29_S | 1.424 | 0.98 |
| 230_N | 236_T | 1.420 | 0.98 |
| 847_I | 850_G | 1.411 | 0.98 |
| 747_R | 755_L | 1.409 | 0.98 |
| 844_P | 849_Q | 1.406 | 0.98 |
| 293_E | 297_T | 1.405 | 0.98 |
| 20_M | 25_L | 1.401 | 0.98 |
| 783_E | 786_G | 1.400 | 0.98 |
| 837_C | 841_R | 1.396 | 0.98 |
| 9_H | 12_R | 1.389 | 0.98 |
| 813_S | 817_A | 1.387 | 0.98 |
| 367_G | 370_E | 1.377 | 0.98 |
| 330_H | 415_T | 1.374 | 0.98 |
| 725_R | 743_D | 1.369 | 0.98 |
| 770_R | 773_D | 1.362 | 0.98 |
| 46_K | 632_D | 1.361 | 0.98 |
| 232_T | 240_T | 1.359 | 0.97 |
| 380_G | 385_C | 1.353 | 0.97 |
| 619_L | 630_E | 1.352 | 0.97 |
| 9_H | 23_G | 1.350 | 0.97 |
| 378_C | 384_Y | 1.349 | 0.97 |
| 515_I | 519_F | 1.348 | 0.97 |
| 846_R | 855_L | 1.347 | 0.97 |
| 7_Y | 26_M | 1.347 | 0.97 |
| 305_K | 319_T | 1.341 | 0.97 |
| 4_K | 7_Y | 1.340 | 0.97 |
| 518_L | 662_E | 1.340 | 0.97 |
| 7_Y | 12_R | 1.338 | 0.97 |
| 4_K | 26_M | 1.336 | 0.97 |
| 723_T | 726_G | 1.335 | 0.97 |
| 24_M | 32_E | 1.332 | 0.97 |
| 847_I | 852_E | 1.331 | 0.97 |
| 788_R | 801_Q | 1.326 | 0.97 |
| 722_P | 824_E | 1.322 | 0.97 |
| 164_S | 195_S | 1.319 | 0.97 |
| 435_Y | 445_C | 1.319 | 0.97 |
| 121_K | 429_K | 1.314 | 0.97 |
| 845_R | 851_L | 1.312 | 0.97 |
| 213_I | 216_H | 1.309 | 0.97 |
| 756_I | 774_L | 1.307 | 0.97 |
| 427_W | 445_C | 1.307 | 0.97 |
| 382_F | 385_C | 1.306 | 0.97 |
| 223_F | 658_Q | 1.301 | 0.96 |
| 792_A | 801_Q | 1.299 | 0.96 |
| 632_D | 635_I | 1.289 | 0.96 |
| 667_A | 674_N | 1.283 | 0.96 |
| 270_V | 346_A | 1.283 | 0.96 |
| 378_C | 383_F | 1.281 | 0.96 |
| 843_I | 847_I | 1.276 | 0.96 |
| 429_K | 432_K | 1.275 | 0.96 |
| 21_L | 24_M | 1.275 | 0.96 |
| 725_R | 741_D | 1.274 | 0.96 |
| 361_F | 366_G | 1.270 | 0.96 |
| 651_N | 658_Q | 1.266 | 0.96 |
| 724_P | 727_P | 1.264 | 0.96 |
| 381_E | 384_Y | 1.262 | 0.96 |
| 11_W | 24_M | 1.262 | 0.96 |
| 846_R | 850_G | 1.260 | 0.96 |
| 195_S | 200_V | 1.258 | 0.96 |
| 422_Q | 430_V | 1.257 | 0.95 |
| 288_L | 348_K | 1.257 | 0.95 |
| 844_P | 850_G | 1.256 | 0.95 |
| 49_T | 659_E | 1.255 | 0.95 |
| 844_P | 852_E | 1.255 | 0.95 |
| 386_N | 390_L | 1.252 | 0.95 |
| 269_E | 289_N | 1.251 | 0.95 |
| 377_N | 384_Y | 1.248 | 0.95 |
| 368_D | 376_F | 1.247 | 0.95 |
| 9_H | 30_A | 1.244 | 0.95 |
| 565_L | 646_I | 1.244 | 0.95 |
| 690_G | 693_V | 1.243 | 0.95 |
| 844_P | 855_L | 1.242 | 0.95 |
| 165_I | 192_K | 1.242 | 0.95 |
| 427_W | 438_P | 1.239 | 0.95 |
| 845_R | 852_E | 1.239 | 0.95 |
| 370_E | 376_F | 1.237 | 0.95 |
| 368_D | 374_H | 1.235 | 0.95 |
| 825_G | 833_V | 1.234 | 0.95 |
| 740_R | 746_I | 1.231 | 0.95 |
| 662_E | 665_K | 1.231 | 0.95 |
| 592_L | 602_L | 1.229 | 0.95 |
| 211_E | 223_F | 1.229 | 0.95 |
| 308_R | 316_A | 1.228 | 0.95 |
| 801_Q | 824_E | 1.224 | 0.95 |
| 421_K | 424_I | 1.222 | 0.95 |
| 309_I | 317_F | 1.222 | 0.95 |
| 289_N | 344_Q | 1.221 | 0.94 |
| 380_G | 383_F | 1.220 | 0.94 |
| 309_I | 315_R | 1.217 | 0.94 |
| 162_S | 168_K | 1.216 | 0.94 |
| 168_K | 180_D | 1.215 | 0.94 |
| 5_E | 11_W | 1.214 | 0.94 |
| 114_Q | 198_T | 1.214 | 0.94 |
| 432_K | 567_Q | 1.211 | 0.94 |
| 379_G | 444_R | 1.210 | 0.94 |
| 368_D | 371_I | 1.208 | 0.94 |
| 801_Q | 825_G | 1.208 | 0.94 |
| 20_M | 24_M | 1.206 | 0.94 |
| 849_Q | 853_R | 1.205 | 0.94 |
| 330_H | 336_A | 1.204 | 0.94 |
| 725_R | 731_E | 1.203 | 0.94 |
| 333_I | 363_Q | 1.201 | 0.94 |
| 781_I | 801_Q | 1.198 | 0.94 |
| 23_G | 27_I | 1.197 | 0.94 |
| 677_N | 683_K | 1.195 | 0.94 |
| 160_N | 163_T | 1.190 | 0.93 |
| 496_V | 565_L | 1.190 | 0.93 |
| 665_K | 677_N | 1.189 | 0.93 |
| 223_F | 490_K | 1.187 | 0.93 |
| 3_V | 671_N | 1.185 | 0.93 |
| 458_G | 466_E | 1.185 | 0.93 |
| 700_A | 747_R | 1.182 | 0.93 |
| 427_W | 435_Y | 1.173 | 0.93 |
| 788_R | 792_A | 1.169 | 0.93 |
| 24_M | 31_T | 1.169 | 0.93 |
| 721_L | 732_G | 1.166 | 0.93 |
| 805_Q | 809_N | 1.165 | 0.92 |
| 844_P | 847_I | 1.164 | 0.92 |
| 490_K | 646_I | 1.161 | 0.92 |
| 25_L | 731_E | 1.161 | 0.92 |
| 370_E | 374_H | 1.161 | 0.92 |
| 202_T | 425_N | 1.159 | 0.92 |
| 210_F | 215_I | 1.159 | 0.92 |
| 811_A | 814_L | 1.157 | 0.92 |
| 328_Q | 332_N | 1.157 | 0.92 |
| 65_V | 379_G | 1.156 | 0.92 |
| 383_F | 386_N | 1.149 | 0.92 |
| 300_N | 442_Q | 1.148 | 0.92 |
| 721_L | 736_E | 1.145 | 0.92 |
| 20_M | 31_T | 1.144 | 0.92 |
| 828_R | 831_E | 1.144 | 0.92 |
| 840_I | 843_I | 1.140 | 0.91 |
| 851_L | 856_L | 1.140 | 0.91 |
| 333_I | 348_K | 1.139 | 0.91 |
| 380_G | 384_Y | 1.139 | 0.91 |
| 377_N | 381_E | 1.138 | 0.91 |
| 420_I | 437_P | 1.136 | 0.91 |
| 436_A | 439_I | 1.135 | 0.91 |
| 21_L | 801_Q | 1.135 | 0.91 |
| 157_C | 162_S | 1.135 | 0.91 |
| 629_M | 632_D | 1.129 | 0.91 |
| 816_N | 821_A | 1.126 | 0.91 |
| 775_L | 800_L | 1.126 | 0.91 |
| 369_P | 372_V | 1.125 | 0.91 |
| 353_F | 356_N | 1.125 | 0.91 |
| 174_A | 632_D | 1.124 | 0.91 |
| 9_H | 20_M | 1.123 | 0.91 |
| 438_P | 445_C | 1.122 | 0.91 |
| 821_A | 833_V | 1.120 | 0.90 |
| 784_L | 792_A | 1.120 | 0.90 |
| 845_R | 849_Q | 1.119 | 0.90 |
| 290_T | 337_K | 1.118 | 0.90 |
| 557_R | 567_Q | 1.117 | 0.90 |
| 378_C | 382_F | 1.117 | 0.90 |
| 788_R | 825_G | 1.116 | 0.90 |
| 7_Y | 11_W | 1.115 | 0.90 |
| 761_R | 769_H | 1.115 | 0.90 |
| 818_T | 842_H | 1.114 | 0.90 |
| 377_N | 382_F | 1.112 | 0.90 |
| 369_P | 432_K | 1.110 | 0.90 |
| 437_P | 445_C | 1.109 | 0.90 |
| 671_N | 683_K | 1.109 | 0.90 |
| 792_A | 829_V | 1.107 | 0.90 |
| 515_I | 518_L | 1.105 | 0.90 |
| 845_R | 848_R | 1.105 | 0.90 |
| 816_N | 825_G | 1.104 | 0.90 |
| 295_N | 446_S | 1.104 | 0.90 |
| 818_T | 824_E | 1.103 | 0.90 |
| 349_L | 468_F | 1.102 | 0.89 |
| 500_K | 553_N | 1.102 | 0.89 |
| 676_T | 683_K | 1.100 | 0.89 |
| 720_H | 758_D | 1.100 | 0.89 |
| 165_I | 200_V | 1.099 | 0.89 |
| 843_I | 846_R | 1.098 | 0.89 |
| 727_P | 743_D | 1.095 | 0.89 |
| 164_S | 200_V | 1.095 | 0.89 |
| 371_I | 375_S | 1.095 | 0.89 |
| 636_N | 644_S | 1.092 | 0.89 |
| 63_T | 774_L | 1.089 | 0.89 |
| 21_L | 796_W | 1.087 | 0.89 |
| 698_V | 705_V | 1.087 | 0.89 |
| 361_F | 368_D | 1.086 | 0.89 |
| 790_W | 793_L | 1.086 | 0.89 |
| 189_T | 369_P | 1.086 | 0.89 |
| 106_E | 633_R | 1.085 | 0.88 |
| 789_G | 794_K | 1.084 | 0.88 |
| 162_S | 180_D | 1.084 | 0.88 |
| 745_S | 749_V | 1.081 | 0.88 |
| 784_L | 800_L | 1.081 | 0.88 |
| 758_D | 764_C | 1.081 | 0.88 |
| 722_P | 825_G | 1.081 | 0.88 |
| 781_I | 792_A | 1.080 | 0.88 |
| 232_T | 269_E | 1.078 | 0.88 |
| 196_C | 199_S | 1.078 | 0.88 |
| 161_I | 172_E | 1.078 | 0.88 |
| 456_R | 459_G | 1.077 | 0.88 |
| 361_F | 370_E | 1.076 | 0.88 |
| 369_P | 425_N | 1.075 | 0.88 |
| 383_F | 391_F | 1.075 | 0.88 |
| 630_E | 634_E | 1.072 | 0.88 |
| 750_N | 756_I | 1.072 | 0.88 |
| 781_I | 804_S | 1.069 | 0.87 |
| 365_S | 374_H | 1.069 | 0.87 |
| 809_N | 836_A | 1.067 | 0.87 |
| 849_Q | 856_L | 1.067 | 0.87 |
| 162_S | 167_G | 1.067 | 0.87 |
| 732_G | 788_R | 1.066 | 0.87 |
| 723_T | 756_I | 1.065 | 0.87 |
| 805_Q | 818_T | 1.064 | 0.87 |
| 21_L | 432_K | 1.063 | 0.87 |
| 371_I | 376_F | 1.061 | 0.87 |
| 428_Q | 433_A | 1.060 | 0.87 |
| 229_N | 232_T | 1.056 | 0.87 |
| 102_E | 851_L | 1.055 | 0.87 |
| 348_K | 429_K | 1.055 | 0.87 |
| 106_E | 172_E | 1.054 | 0.86 |
| 5_E | 796_W | 1.053 | 0.86 |
| 202_T | 619_L | 1.052 | 0.86 |
| 420_I | 438_P | 1.051 | 0.86 |
| 723_T | 736_E | 1.050 | 0.86 |
| 806_E | 814_L | 1.050 | 0.86 |
| 5_E | 9_H | 1.049 | 0.86 |
| 619_L | 646_I | 1.049 | 0.86 |
| 851_L | 855_L | 1.047 | 0.86 |
| 334_S | 446_S | 1.047 | 0.86 |
| 843_I | 848_R | 1.047 | 0.86 |
| 843_I | 850_G | 1.046 | 0.86 |
| 801_Q | 804_S | 1.046 | 0.86 |
| 633_R | 731_E | 1.045 | 0.86 |
| 383_F | 390_L | 1.045 | 0.86 |
| 92_N | 270_V | 1.045 | 0.86 |
| 827_D | 830_I | 1.045 | 0.86 |
| 346_A | 395_W | 1.044 | 0.86 |
| 849_Q | 854_I | 1.043 | 0.86 |
| 306_R | 322_K | 1.042 | 0.86 |
| 721_L | 750_N | 1.042 | 0.86 |
| 377_N | 385_C | 1.042 | 0.86 |
| 25_L | 801_Q | 1.042 | 0.86 |
| 218_C | 222_G | 1.040 | 0.85 |
| 21_L | 721_L | 1.040 | 0.85 |
| 387_S | 390_L | 1.039 | 0.85 |
| 756_I | 800_L | 1.039 | 0.85 |
| 159_F | 162_S | 1.038 | 0.85 |
| 46_K | 62_D | 1.037 | 0.85 |
| 796_W | 812_V | 1.035 | 0.85 |
| 723_T | 740_R | 1.032 | 0.85 |
| 834_Q | 838_R | 1.032 | 0.85 |
| 371_I | 374_H | 1.032 | 0.85 |
| 331_C | 338_W | 1.032 | 0.85 |
| 830_I | 833_V | 1.031 | 0.85 |
| 9_H | 19_T | 1.031 | 0.85 |
| 230_N | 388_T | 1.027 | 0.84 |
| 754_A | 758_D | 1.027 | 0.84 |
| 441_G | 445_C | 1.027 | 0.84 |
| 674_N | 677_N | 1.026 | 0.84 |
| 172_E | 200_V | 1.024 | 0.84 |
| 168_K | 175_F | 1.024 | 0.84 |
| 784_L | 787_R | 1.024 | 0.84 |
| 293_E | 446_S | 1.024 | 0.84 |
| 378_C | 386_N | 1.023 | 0.84 |
| 85_V | 630_E | 1.022 | 0.84 |
| 164_S | 170_Q | 1.022 | 0.84 |
| 802_Y | 806_E | 1.021 | 0.84 |
| 427_W | 437_P | 1.021 | 0.84 |
| 721_L | 816_N | 1.021 | 0.84 |
| 847_I | 854_I | 1.020 | 0.84 |
| 583_V | 698_V | 1.020 | 0.84 |
| 632_D | 659_E | 1.020 | 0.84 |
| 629_M | 788_R | 1.019 | 0.84 |
| 721_L | 774_L | 1.018 | 0.84 |
| 418_C | 445_C | 1.017 | 0.84 |
| 377_N | 380_G | 1.017 | 0.84 |
| 4_K | 29_S | 1.016 | 0.84 |
| 236_T | 633_R | 1.016 | 0.84 |
| 847_I | 856_L | 1.015 | 0.84 |
| 586_Y | 589_D | 1.015 | 0.84 |
| 723_T | 824_E | 1.014 | 0.83 |
| 387_S | 391_F | 1.014 | 0.83 |
| 325_N | 334_S | 1.013 | 0.83 |
| 385_C | 390_L | 1.011 | 0.83 |
| 12_R | 25_L | 1.010 | 0.83 |
| 203_Q | 207_K | 1.010 | 0.83 |
| 385_C | 391_F | 1.010 | 0.83 |
| 565_L | 580_I | 1.009 | 0.83 |
| 361_F | 371_I | 1.008 | 0.83 |
| 574_K | 577_Q | 1.008 | 0.83 |
| 848_R | 853_R | 1.008 | 0.83 |
| 838_R | 844_P | 1.008 | 0.83 |
| 12_R | 31_T | 1.008 | 0.83 |
| 431_G | 445_C | 1.007 | 0.83 |
| 7_Y | 20_M | 1.007 | 0.83 |
| 207_K | 213_I | 1.007 | 0.83 |
| 746_I | 750_N | 1.006 | 0.83 |
| 333_I | 341_T | 1.005 | 0.83 |
| 426_M | 433_A | 1.005 | 0.83 |
| 92_N | 174_A | 1.004 | 0.83 |
| 496_V | 632_D | 1.003 | 0.83 |
| 422_Q | 431_G | 1.003 | 0.83 |
| 756_I | 804_S | 1.002 | 0.82 |
| 722_P | 736_E | 1.001 | 0.82 |
| 7_Y | 21_L | 1.000 | 0.82 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 4ncoA | 3 | 0.4883 | 100 | 0.448 | Contact Map |
| 4jzzA | 1 | 0.3925 | 100 | 0.561 | Contact Map |
| 3lqaG | 1 | 0.3353 | 100 | 0.634 | Contact Map |
| 2bf1A | 1 | 0.3481 | 100 | 0.639 | Contact Map |
| 4i3sG | 1 | 0.2103 | 100 | 0.824 | Contact Map |
| 1qbzA | 3 | 0.1402 | 100 | 0.863 | Contact Map |
| 3tygA | 1 | 0.1706 | 100 | 0.867 | Contact Map |
| 4jpkA | 1 | 0.1776 | 100 | 0.889 | Contact Map |
| 1envA | 1 | 0.132 | 100 | 0.893 | Contact Map |
| 3p30A | 1 | 0.0981 | 100 | 0.899 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)