| ClpB |
| ID: | 1402262161 |
Query Sequence |
Download Alignment We filter this alignment to remove positions that have > 75% gaps before running GREMLIN. |
| Length: | 857 (855) | ||
| Sequences: | 3000 (1492.2) | ||
| Seq/Len: | 3.509 | ||
| Nf(neff/√len): | 51.0 |
Jackhmmer Results: (2014_04_16)
Sequences per length for each position, BEFORE the coverage/gap filter was applied
Legend: Dots above the red line, indicates positions where there is > 5 sequences per length (if visible, green bar = 20 seq/len). Point of this graphic is to give you an idea if resubmitting a sub-portion of your sequence might help increase the overall Seq/Len (which after applying the coverage filter is at: 3.509).
Sequences per length for each position, AFTER the coverage/gap filter was applied
Residue pairs sorted by coevolution strength:
Legend: The darker and larger the blue dots, the higher strength in covariance. Below we provide the list of the top [1.5 x length] covarying residues with sequence seperation > 3. The i and j are positions as given in the input sequence.
| i | j | Scaled score | Prob |
| 170_E | 174_Q | 5.034 | 1.00 |
| 796_S | 847_E | 4.633 | 1.00 |
| 419_I | 448_L | 4.272 | 1.00 |
| 776_Q | 800_L | 4.150 | 1.00 |
| 167_D | 236_R | 3.988 | 1.00 |
| 490_R | 502_Q | 3.750 | 1.00 |
| 165_T | 238_L | 3.691 | 1.00 |
| 716_M | 757_I | 3.568 | 1.00 |
| 772_A | 801_K | 3.387 | 1.00 |
| 243_G | 298_M | 3.382 | 1.00 |
| 479_L | 506_I | 3.375 | 1.00 |
| 412_L | 455_Y | 3.374 | 1.00 |
| 26_N | 68_L | 3.298 | 1.00 |
| 346_T | 374_A | 3.259 | 1.00 |
| 508_E | 512_Q | 3.194 | 1.00 |
| 496_A | 500_E | 3.111 | 1.00 |
| 426_Q | 445_N | 3.091 | 1.00 |
| 423_K | 452_E | 3.059 | 1.00 |
| 798_E | 847_E | 3.003 | 1.00 |
| 471_G | 512_Q | 2.856 | 1.00 |
| 567_H | 574_N | 2.837 | 1.00 |
| 768_E | 805_E | 2.762 | 1.00 |
| 166_I | 171_R | 2.655 | 1.00 |
| 561_R | 564_Q | 2.648 | 1.00 |
| 343_V | 374_A | 2.646 | 1.00 |
| 565_E | 568_H | 2.616 | 1.00 |
| 353_L | 356_R | 2.555 | 1.00 |
| 832_Q | 837_E | 2.528 | 1.00 |
| 497_R | 500_E | 2.497 | 1.00 |
| 602_L | 757_I | 2.473 | 1.00 |
| 90_V | 114_A | 2.473 | 1.00 |
| 482_A | 506_I | 2.375 | 1.00 |
| 780_K | 783_Y | 2.373 | 1.00 |
| 267_A | 307_E | 2.373 | 1.00 |
| 159_Q | 162_K | 2.372 | 1.00 |
| 825_I | 846_L | 2.326 | 1.00 |
| 486_I | 506_I | 2.315 | 1.00 |
| 264_N | 268_K | 2.297 | 1.00 |
| 230_E | 233_K | 2.291 | 1.00 |
| 479_L | 513_L | 2.276 | 1.00 |
| 602_L | 679_V | 2.246 | 1.00 |
| 446_E | 450_D | 2.245 | 1.00 |
| 36_S | 65_N | 2.238 | 1.00 |
| 693_V | 714_V | 2.182 | 1.00 |
| 500_E | 505_K | 2.166 | 1.00 |
| 339_A | 669_R | 2.154 | 1.00 |
| 791_Y | 844_I | 2.152 | 1.00 |
| 488_Q | 492_V | 2.131 | 1.00 |
| 644_S | 647_V | 2.125 | 1.00 |
| 27_Q | 74_V | 2.109 | 1.00 |
| 562_M | 621_F | 2.085 | 1.00 |
| 720_L | 745_V | 2.079 | 1.00 |
| 427_Q | 430_M | 2.066 | 1.00 |
| 50_L | 55_I | 2.044 | 1.00 |
| 408_K | 416_D | 2.044 | 1.00 |
| 475_I | 513_L | 2.043 | 1.00 |
| 567_H | 577_V | 2.041 | 1.00 |
| 162_K | 170_E | 2.024 | 1.00 |
| 485_A | 497_R | 1.987 | 1.00 |
| 587_S | 592_A | 1.985 | 1.00 |
| 582_N | 831_Q | 1.978 | 1.00 |
| 577_V | 614_L | 1.971 | 1.00 |
| 505_K | 508_E | 1.959 | 1.00 |
| 745_V | 754_I | 1.958 | 1.00 |
| 402_R | 406_D | 1.948 | 1.00 |
| 434_D | 437_S | 1.939 | 1.00 |
| 563_E | 585_R | 1.910 | 1.00 |
| 463_K | 467_A | 1.898 | 1.00 |
| 796_S | 845_R | 1.863 | 1.00 |
| 478_E | 505_K | 1.860 | 0.99 |
| 483_K | 510_E | 1.854 | 0.99 |
| 321_Q | 658_E | 1.832 | 0.99 |
| 481_Q | 485_A | 1.815 | 0.99 |
| 782_L | 821_I | 1.809 | 0.99 |
| 477_A | 481_Q | 1.790 | 0.99 |
| 482_A | 501_L | 1.780 | 0.99 |
| 203_V | 280_L | 1.779 | 0.99 |
| 600_S | 694_L | 1.771 | 0.99 |
| 394_I | 536_I | 1.770 | 0.99 |
| 370_I | 394_I | 1.770 | 0.99 |
| 510_E | 514_E | 1.766 | 0.99 |
| 10_F | 111_F | 1.755 | 0.99 |
| 690_L | 693_V | 1.751 | 0.99 |
| 337_F | 669_R | 1.747 | 0.99 |
| 449_S | 453_R | 1.733 | 0.99 |
| 104_N | 150_N | 1.724 | 0.99 |
| 425_E | 440_R | 1.721 | 0.99 |
| 41_Q | 44_G | 1.716 | 0.99 |
| 151_D | 157_Q | 1.709 | 0.99 |
| 640_K | 685_D | 1.694 | 0.99 |
| 393_L | 540_L | 1.691 | 0.99 |
| 222_R | 417_R | 1.680 | 0.99 |
| 478_E | 512_Q | 1.677 | 0.99 |
| 849_N | 852_R | 1.674 | 0.99 |
| 838_L | 844_I | 1.674 | 0.99 |
| 638_M | 642_S | 1.669 | 0.99 |
| 52_S | 142_Q | 1.665 | 0.99 |
| 553_E | 561_R | 1.653 | 0.99 |
| 167_D | 170_E | 1.650 | 0.99 |
| 408_K | 459_E | 1.645 | 0.98 |
| 280_L | 323_I | 1.642 | 0.98 |
| 426_Q | 441_L | 1.640 | 0.98 |
| 138_Q | 142_Q | 1.640 | 0.98 |
| 250_K | 254_E | 1.634 | 0.98 |
| 343_V | 378_H | 1.633 | 0.98 |
| 459_E | 463_K | 1.632 | 0.98 |
| 55_I | 60_L | 1.629 | 0.98 |
| 63_D | 128_A | 1.629 | 0.98 |
| 482_A | 505_K | 1.627 | 0.98 |
| 638_M | 688_N | 1.623 | 0.98 |
| 372_A | 533_D | 1.618 | 0.98 |
| 234_G | 272_N | 1.613 | 0.98 |
| 563_E | 578_D | 1.612 | 0.98 |
| 422_L | 444_L | 1.607 | 0.98 |
| 453_R | 457_E | 1.607 | 0.98 |
| 469_L | 527_L | 1.602 | 0.98 |
| 85_Q | 89_R | 1.590 | 0.98 |
| 242_M | 245_L | 1.589 | 0.98 |
| 641_H | 644_S | 1.588 | 0.98 |
| 720_L | 744_V | 1.587 | 0.98 |
| 724_L | 744_V | 1.580 | 0.98 |
| 742_L | 745_V | 1.576 | 0.98 |
| 474_T | 477_A | 1.575 | 0.98 |
| 34_L | 87_L | 1.563 | 0.98 |
| 439_K | 443_M | 1.561 | 0.98 |
| 226_G | 233_K | 1.559 | 0.98 |
| 789_R | 840_P | 1.556 | 0.98 |
| 475_I | 509_L | 1.554 | 0.98 |
| 575_E | 738_K | 1.542 | 0.97 |
| 482_A | 486_I | 1.528 | 0.97 |
| 231_G | 406_D | 1.527 | 0.97 |
| 803_L | 820_A | 1.521 | 0.97 |
| 647_V | 689_I | 1.520 | 0.97 |
| 359_L | 362_H | 1.519 | 0.97 |
| 569_R | 613_E | 1.517 | 0.97 |
| 849_N | 853_I | 1.516 | 0.97 |
| 97_L | 133_T | 1.511 | 0.97 |
| 775_A | 804_S | 1.511 | 0.97 |
| 641_H | 650_P | 1.510 | 0.97 |
| 594_P | 785_R | 1.502 | 0.97 |
| 30_E | 84_S | 1.497 | 0.97 |
| 90_V | 115_A | 1.496 | 0.97 |
| 511_K | 515_A | 1.495 | 0.97 |
| 39_L | 64_I | 1.494 | 0.97 |
| 83_P | 87_L | 1.488 | 0.97 |
| 102_G | 148_S | 1.486 | 0.97 |
| 280_L | 312_G | 1.483 | 0.97 |
| 437_S | 440_R | 1.483 | 0.97 |
| 637_F | 661_Y | 1.480 | 0.96 |
| 177_L | 221_Q | 1.477 | 0.96 |
| 666_V | 709_F | 1.465 | 0.96 |
| 432_E | 437_S | 1.462 | 0.96 |
| 173_E | 236_R | 1.462 | 0.96 |
| 411_E | 454_Q | 1.460 | 0.96 |
| 453_R | 456_S | 1.449 | 0.96 |
| 284_V | 329_L | 1.447 | 0.96 |
| 482_A | 509_L | 1.447 | 0.96 |
| 107_S | 154_A | 1.444 | 0.96 |
| 418_R | 447_E | 1.440 | 0.96 |
| 416_D | 459_E | 1.439 | 0.96 |
| 26_N | 71_L | 1.437 | 0.96 |
| 779_L | 795_I | 1.435 | 0.96 |
| 160_A | 261_G | 1.434 | 0.96 |
| 725_I | 737_M | 1.428 | 0.95 |
| 107_S | 149_V | 1.427 | 0.95 |
| 794_H | 845_R | 1.425 | 0.95 |
| 698_R | 706_T | 1.422 | 0.95 |
| 514_E | 518_Q | 1.422 | 0.95 |
| 693_V | 699_L | 1.416 | 0.95 |
| 40_N | 61_R | 1.413 | 0.95 |
| 343_V | 375_T | 1.412 | 0.95 |
| 264_N | 267_A | 1.412 | 0.95 |
| 9_K | 12_L | 1.401 | 0.95 |
| 794_H | 843_V | 1.398 | 0.95 |
| 48_P | 159_Q | 1.394 | 0.95 |
| 283_M | 296_G | 1.394 | 0.95 |
| 474_T | 478_E | 1.392 | 0.95 |
| 742_L | 812_Y | 1.384 | 0.94 |
| 807_G | 817_L | 1.383 | 0.94 |
| 615_C | 715_I | 1.382 | 0.94 |
| 36_S | 64_I | 1.378 | 0.94 |
| 145_G | 149_V | 1.371 | 0.94 |
| 348_A | 421_Q | 1.367 | 0.94 |
| 839_V | 842_K | 1.364 | 0.94 |
| 137_T | 140_I | 1.357 | 0.94 |
| 499_S | 502_Q | 1.356 | 0.93 |
| 342_S | 345_D | 1.351 | 0.93 |
| 829_L | 844_I | 1.344 | 0.93 |
| 569_R | 626_D | 1.343 | 0.93 |
| 430_M | 445_N | 1.343 | 0.93 |
| 67_A | 125_I | 1.342 | 0.93 |
| 850_E | 853_I | 1.337 | 0.93 |
| 779_L | 821_I | 1.332 | 0.93 |
| 242_M | 283_M | 1.331 | 0.93 |
| 767_G | 770_H | 1.331 | 0.93 |
| 197_R | 591_L | 1.329 | 0.93 |
| 638_M | 685_D | 1.329 | 0.93 |
| 628_A | 669_R | 1.328 | 0.93 |
| 802_L | 848_V | 1.325 | 0.92 |
| 826_E | 830_A | 1.325 | 0.92 |
| 569_R | 620_N | 1.321 | 0.92 |
| 617_A | 620_N | 1.307 | 0.92 |
| 585_R | 827_N | 1.307 | 0.92 |
| 415_L | 451_K | 1.307 | 0.92 |
| 736_H | 740_L | 1.304 | 0.92 |
| 321_Q | 657_E | 1.302 | 0.92 |
| 602_L | 745_V | 1.302 | 0.92 |
| 778_Q | 781_R | 1.300 | 0.91 |
| 153_G | 156_D | 1.295 | 0.91 |
| 124_D | 128_A | 1.294 | 0.91 |
| 795_I | 799_A | 1.293 | 0.91 |
| 65_N | 69_N | 1.293 | 0.91 |
| 582_N | 827_N | 1.292 | 0.91 |
| 450_D | 454_Q | 1.292 | 0.91 |
| 242_M | 266_L | 1.287 | 0.91 |
| 792_E | 843_V | 1.285 | 0.91 |
| 630_V | 672_S | 1.285 | 0.91 |
| 133_T | 137_T | 1.282 | 0.91 |
| 227_E | 417_R | 1.272 | 0.90 |
| 478_E | 481_Q | 1.272 | 0.90 |
| 249_A | 262_V | 1.271 | 0.90 |
| 190_T | 336_V | 1.265 | 0.90 |
| 528_R | 532_T | 1.265 | 0.90 |
| 166_I | 239_A | 1.265 | 0.90 |
| 199_K | 392_D | 1.262 | 0.90 |
| 177_L | 180_V | 1.261 | 0.90 |
| 848_V | 851_D | 1.260 | 0.90 |
| 480_E | 484_I | 1.259 | 0.90 |
| 117_E | 133_T | 1.258 | 0.90 |
| 782_L | 826_E | 1.257 | 0.90 |
| 32_L | 71_L | 1.252 | 0.89 |
| 227_E | 413_D | 1.250 | 0.89 |
| 723_D | 727_E | 1.248 | 0.89 |
| 100_K | 137_T | 1.246 | 0.89 |
| 742_L | 762_V | 1.245 | 0.89 |
| 569_R | 617_A | 1.244 | 0.89 |
| 24_H | 73_Q | 1.242 | 0.89 |
| 63_D | 66_Q | 1.242 | 0.89 |
| 735_A | 739_E | 1.241 | 0.89 |
| 775_A | 800_L | 1.238 | 0.89 |
| 364_Q | 530_K | 1.238 | 0.89 |
| 563_E | 581_S | 1.238 | 0.89 |
| 734_Y | 737_M | 1.237 | 0.89 |
| 571_I | 777_I | 1.233 | 0.88 |
| 495_L | 504_G | 1.230 | 0.88 |
| 806_N | 820_A | 1.230 | 0.88 |
| 24_H | 69_N | 1.227 | 0.88 |
| 820_A | 824_Q | 1.221 | 0.88 |
| 24_H | 68_L | 1.221 | 0.88 |
| 246_V | 298_M | 1.220 | 0.88 |
| 13_A | 41_Q | 1.212 | 0.87 |
| 418_R | 421_Q | 1.210 | 0.87 |
| 96_K | 99_Q | 1.207 | 0.87 |
| 795_I | 846_L | 1.198 | 0.86 |
| 738_K | 742_L | 1.197 | 0.86 |
| 223_I | 237_V | 1.197 | 0.86 |
| 603_F | 763_F | 1.195 | 0.86 |
| 496_A | 499_S | 1.194 | 0.86 |
| 679_V | 757_I | 1.193 | 0.86 |
| 105_F | 152_Q | 1.190 | 0.86 |
| 482_A | 485_A | 1.190 | 0.86 |
| 97_L | 114_A | 1.187 | 0.86 |
| 31_P | 87_L | 1.185 | 0.86 |
| 203_V | 323_I | 1.183 | 0.85 |
| 439_K | 790_G | 1.182 | 0.85 |
| 514_E | 517_T | 1.179 | 0.85 |
| 97_L | 100_K | 1.179 | 0.85 |
| 416_D | 455_Y | 1.179 | 0.85 |
| 46_V | 136_I | 1.178 | 0.85 |
| 540_L | 548_V | 1.177 | 0.85 |
| 18_Q | 81_V | 1.176 | 0.85 |
| 720_L | 748_N | 1.175 | 0.85 |
| 801_K | 805_E | 1.173 | 0.85 |
| 207_E | 316_L | 1.165 | 0.84 |
| 171_R | 176_K | 1.163 | 0.84 |
| 471_G | 516_A | 1.160 | 0.84 |
| 3_L | 14_L | 1.160 | 0.84 |
| 23_G | 96_K | 1.160 | 0.84 |
| 744_V | 747_H | 1.158 | 0.84 |
| 630_V | 666_V | 1.158 | 0.84 |
| 412_L | 526_L | 1.156 | 0.84 |
| 783_Y | 793_I | 1.156 | 0.84 |
| 738_K | 762_V | 1.154 | 0.83 |
| 35_M | 112_V | 1.152 | 0.83 |
| 44_G | 47_S | 1.146 | 0.83 |
| 479_L | 509_L | 1.145 | 0.83 |
| 6_L | 10_F | 1.142 | 0.83 |
| 776_Q | 797_D | 1.141 | 0.82 |
| 197_R | 699_L | 1.141 | 0.82 |
| 32_L | 67_A | 1.141 | 0.82 |
| 486_I | 502_Q | 1.140 | 0.82 |
| 36_S | 40_N | 1.138 | 0.82 |
| 764_H | 770_H | 1.137 | 0.82 |
| 362_H | 473_Q | 1.136 | 0.82 |
| 410_E | 415_L | 1.135 | 0.82 |
| 8_N | 152_Q | 1.134 | 0.82 |
| 36_S | 61_R | 1.130 | 0.82 |
| 791_Y | 838_L | 1.129 | 0.82 |
| 242_M | 246_V | 1.126 | 0.81 |
| 366_T | 532_T | 1.125 | 0.81 |
| 559_L | 585_R | 1.125 | 0.81 |
| 140_I | 147_E | 1.118 | 0.81 |
| 132_T | 135_N | 1.116 | 0.81 |
| 637_F | 645_R | 1.115 | 0.80 |
| 18_Q | 29_I | 1.113 | 0.80 |
| 20_L | 37_A | 1.110 | 0.80 |
| 97_L | 137_T | 1.108 | 0.80 |
| 53_A | 131_A | 1.106 | 0.80 |
| 168_L | 239_A | 1.106 | 0.80 |
| 790_G | 840_P | 1.105 | 0.80 |
| 467_A | 471_G | 1.102 | 0.79 |
| 592_A | 598_I | 1.102 | 0.79 |
| 632_I | 646_L | 1.101 | 0.79 |
| 123_A | 127_K | 1.101 | 0.79 |
| 785_R | 826_E | 1.100 | 0.79 |
| 167_D | 238_L | 1.100 | 0.79 |
| 222_R | 227_E | 1.100 | 0.79 |
| 561_R | 565_E | 1.099 | 0.79 |
| 193_V | 336_V | 1.098 | 0.79 |
| 193_V | 399_S | 1.095 | 0.79 |
| 775_A | 821_I | 1.095 | 0.79 |
| 263_L | 302_A | 1.094 | 0.79 |
| 192_Q | 400_S | 1.091 | 0.78 |
| 269_Q | 273_V | 1.091 | 0.78 |
| 565_E | 617_A | 1.090 | 0.78 |
| 490_R | 493_G | 1.089 | 0.78 |
| 7_T | 107_S | 1.088 | 0.78 |
| 560_L | 834_L | 1.088 | 0.78 |
| 773_S | 776_Q | 1.086 | 0.78 |
| 160_A | 265_D | 1.086 | 0.78 |
| 723_D | 744_V | 1.086 | 0.78 |
| 93_L | 96_K | 1.084 | 0.78 |
| 511_K | 514_E | 1.082 | 0.78 |
| 795_I | 800_L | 1.079 | 0.77 |
| 423_K | 448_L | 1.077 | 0.77 |
| 424_L | 427_Q | 1.077 | 0.77 |
| 498_M | 502_Q | 1.074 | 0.77 |
| 802_L | 806_N | 1.073 | 0.77 |
| 6_L | 111_F | 1.072 | 0.77 |
| 317_D | 321_Q | 1.069 | 0.76 |
| 289_A | 293_M | 1.068 | 0.76 |
| 849_N | 854_V | 1.066 | 0.76 |
| 603_F | 715_I | 1.065 | 0.76 |
| 486_I | 501_L | 1.060 | 0.76 |
| 221_Q | 225_N | 1.060 | 0.76 |
| 197_R | 398_A | 1.060 | 0.76 |
| 189_R | 192_Q | 1.059 | 0.75 |
| 104_N | 148_S | 1.055 | 0.75 |
| 489_A | 494_D | 1.052 | 0.75 |
| 779_L | 783_Y | 1.051 | 0.75 |
| 429_L | 441_L | 1.050 | 0.75 |
| 559_L | 588_R | 1.049 | 0.74 |
| 452_E | 456_S | 1.048 | 0.74 |
| 126_L | 129_A | 1.047 | 0.74 |
| 112_V | 136_I | 1.047 | 0.74 |
| 381_I | 540_L | 1.047 | 0.74 |
| 320_R | 649_A | 1.046 | 0.74 |
| 679_V | 745_V | 1.045 | 0.74 |
| 539_V | 830_A | 1.044 | 0.74 |
| 479_L | 482_A | 1.043 | 0.74 |
| 216_V | 261_G | 1.043 | 0.74 |
| 402_R | 588_R | 1.042 | 0.74 |
| 593_D | 753_F | 1.041 | 0.74 |
| 602_L | 716_M | 1.039 | 0.73 |
| 470_S | 474_T | 1.038 | 0.73 |
| 405_I | 469_L | 1.034 | 0.73 |
| 429_L | 432_E | 1.034 | 0.73 |
| 423_K | 426_Q | 1.033 | 0.73 |
| 245_L | 262_V | 1.032 | 0.73 |
| 6_L | 91_L | 1.032 | 0.73 |
| 57_A | 61_R | 1.031 | 0.73 |
| 49_L | 143_M | 1.030 | 0.73 |
| 455_Y | 459_E | 1.029 | 0.72 |
| 778_Q | 818_K | 1.029 | 0.72 |
| 745_V | 760_V | 1.027 | 0.72 |
| 353_L | 480_E | 1.026 | 0.72 |
| 30_E | 86_D | 1.025 | 0.72 |
| 60_L | 125_I | 1.025 | 0.72 |
| 36_S | 68_L | 1.025 | 0.72 |
| 484_I | 488_Q | 1.024 | 0.72 |
| 35_M | 122_L | 1.023 | 0.72 |
| 323_I | 630_V | 1.021 | 0.72 |
| 517_T | 577_V | 1.019 | 0.71 |
| 506_I | 513_L | 1.019 | 0.71 |
| 350_L | 373_A | 1.019 | 0.71 |
| 302_A | 551_M | 1.019 | 0.71 |
| 796_S | 799_A | 1.015 | 0.71 |
| 475_I | 479_L | 1.015 | 0.71 |
| 13_A | 34_L | 1.014 | 0.71 |
| 768_E | 801_K | 1.014 | 0.71 |
| 146_G | 154_A | 1.013 | 0.71 |
| 494_D | 497_R | 1.013 | 0.71 |
| 575_E | 764_H | 1.012 | 0.71 |
| 56_N | 59_Q | 1.011 | 0.71 |
| 585_R | 834_L | 1.011 | 0.71 |
| 650_P | 657_E | 1.010 | 0.70 |
| 419_I | 451_K | 1.006 | 0.70 |
| 67_A | 121_T | 1.006 | 0.70 |
| 193_V | 280_L | 1.005 | 0.70 |
| 461_E | 524_M | 1.003 | 0.70 |
| 398_A | 699_L | 1.003 | 0.70 |
| 197_R | 778_Q | 1.003 | 0.70 |
| 67_A | 70_R | 1.001 | 0.69 |
| 13_A | 38_L | 1.001 | 0.69 |
| 566_L | 617_A | 1.000 | 0.69 |
Prob = P(contact | scaled_score, seq/len).
Scaled Score = (raw_score/average(raw_scores)).
- Text file of contact predictions (all 3L/2 predictions)
- Generate restraints for ROSETTA Structure Modeling
- Import to GREMLIN BETA - features includes ability to upload PDB and latest P(contact) calculation based on eLife 2015 fitting to PDB data.
GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled Score > 1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-position alignment confidence. Inter oligomeric contacts in the pdb are in shades of red.
| PDB | M | Cov | P(%) | HHΔ | |
| 1qvrA | 3 | 0.9335 | 100 | 0.455 | Contact Map |
| 1r6bX | 1 | 0.8063 | 100 | 0.5 | Contact Map |
| 3pxiA | 3 | 0.8296 | 100 | 0.53 | Contact Map |
| 4ciuA | 1 | 0.7655 | 100 | 0.557 | Contact Map |
| 3pxgA | 6 | 0.5216 | 100 | 0.741 | Contact Map |
| 4hseA | 1 | 0.4306 | 100 | 0.772 | Contact Map |
| 3vkgA | 2 | 0.8133 | 100 | 0.82 | Contact Map |
| 4akgA | 2 | 0.7911 | 100 | 0.828 | Contact Map |
| 4lj9A | 1 | 0.3851 | 100 | 0.838 | Contact Map |
| 1g41A | 1 | 0.2579 | 100 | 0.885 | Contact Map |
Cov = coverage of hit
P(%) = probability
Sequence Conservation (Image Generated using WebLogo v3)