OPENSEQ.org - YQCC - ECOLI GREMLIN

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YQCC - Uncharacterized protein YqcC

UniProt:	Q46919	Sequence MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDTMEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDALFADDAS	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG13172
Length:	109 (108)
Sequences:	232
Seq/Len:	2.15

YQCC
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
34_F	45_M	3.355	1.00
47_P	78_Y	2.821	1.00
47_P	79_Y	2.631	1.00
41_F	54_V	2.291	1.00
38_Q	42_M	2.115	0.99
61_D	65_N	2.1	0.99
53_W	78_Y	2.029	0.99
81_M	84_A	1.946	0.99
36_S	43_D	1.808	0.98
15_E	19_R	1.801	0.98
25_R	49_E	1.72	0.97
59_M	103_L	1.538	0.93
21_H	93_I	1.53	0.93
14_L	56_I	1.514	0.93
63_L	68_P	1.48	0.91
73_F	79_Y	1.477	0.91
11_L	18_L	1.475	0.91
59_M	75_V	1.443	0.90
7_V	100_L	1.437	0.90
8_R	60_H	1.405	0.88
73_F	78_Y	1.38	0.87
47_P	53_W	1.352	0.86
31_P	87_H	1.325	0.84
53_W	79_Y	1.282	0.81
34_F	42_M	1.281	0.81
12_Q	60_H	1.242	0.78
64_D	75_V	1.212	0.76
96_E	101_D	1.206	0.75
79_Y	101_D	1.188	0.74
53_W	94_L	1.186	0.74
53_W	80_E	1.184	0.73
8_R	64_D	1.171	0.72
60_H	64_D	1.158	0.71
10_Q	45_M	1.138	0.69
14_L	100_L	1.123	0.68
18_L	54_V	1.101	0.65
47_P	73_F	1.101	0.65
35_N	41_F	1.086	0.64
21_H	56_I	1.083	0.64
76_A	94_L	1.066	0.62
26_N	45_M	1.055	0.61
25_R	62_L	1.051	0.60
34_F	104_F	1.051	0.60
8_R	100_L	1.049	0.60
35_N	57_P	1.016	0.56
46_E	54_V	1.013	0.56
5_D	18_L	1.009	0.55
1_M	43_D	1.006	0.55
73_F	104_F	1.006	0.55

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
2hgkA	1	1	100	0.006	Contact Map	0.267
1s99A	2	0.3853	4.9	0.945	Contact Map	0
2dulA	1	0.7339	4.6	0.946	Contact Map	0.121
4jkvA	2	0.7615	4.6	0.946	Contact Map	0.267
3htkC	1	0.4404	2.5	0.953	Contact Map	0.158
3d1bA	3	0.9358	1.9	0.955	Contact Map	0.083
1wlxA	1	0.6789	1.7	0.957	Contact Map	0.03
4aflA	6	0.3303	1.5	0.958	Contact Map	0.181
1jbwA	1	0.5596	1.5	0.958	Contact Map	0.027
3gf3A	1	0.422	1.5	0.958	Contact Map	0

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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