May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ARNA - Bifunctional polymyxin resistance protein ArnA
UniProt: P77398 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14091
Length: 660 (659)
Sequences: 63
Seq/Len: 0.10

ARNA
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P77398
  • Not enough sequences to perform GREMLIN analysis on (0.10 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
1z7eA611000.668Contact Map
2blnA20.46211000.802Contact Map
1fmtA20.46061000.819Contact Map
3tqqA10.46211000.819Contact Map
3q0iA10.46061000.82Contact Map
4iqfA40.46521000.823Contact Map
2bw0A10.43791000.833Contact Map
4lxqA20.40151000.853Contact Map
1zghA10.34241000.861Contact Map
2bllA10.52271000.863Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.1247 seconds.