May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

ARND - Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD
UniProt: P76472 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14092
Length: 296 (292)
Sequences: 143
Seq/Len: 0.49

ARND
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P76472
  • Not enough sequences to perform GREMLIN analysis on (0.49 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
3qbuA40.76351000.798Contact Map
4ly4A40.76351000.798Contact Map
3rxzA40.79391000.803Contact Map
3hftA10.702799.90.821Contact Map
3s6oA40.770399.90.829Contact Map
3cl6A20.753499.90.831Contact Map
4f9dA20.810899.90.842Contact Map
1ny1A20.65299.90.846Contact Map
2vyoA10.699399.90.848Contact Map
2w3zA10.648699.90.848Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.332 seconds.