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OPENSEQ.org

ARIR - Probable two-component-system connector protein AriR
UniProt: P75993 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG14290
Length: 88 (88)
Sequences: 59
Seq/Len: 0.67

ARIR
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: ARIR YCGZ
GREMLIN Results:
  • No predictions exist for P75993
  • Not enough sequences to perform GREMLIN analysis on (0.67 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
2oxlA20.727399.90.334Contact Map
3zdmA40.488619.30.908Contact Map
3kfuF20.965913.80.914Contact Map
2olvA20.909112.60.916Contact Map
1w63A60.7512.60.916Contact Map
2lxbA20.511412.10.916Contact Map
2hz7A10.9659110.918Contact Map
2zu6B20.90918.50.922Contact Map
3h0lB80.97737.90.923Contact Map
2lznA10.77277.90.923Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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