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OPENSEQ.org

YRAQ - UPF0718 protein YraQ
UniProt: P45468 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12782
Length: 346 (287)
Sequences: 783
Seq/Len: 2.73

YRAQ
Paralog alert: 0.10 [within 20: 0.01] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
313_L 329_G 2.709 1.00
317_R 322_A 2.191 1.00
113_L 185_L 2.05 1.00
157_N 160_T 1.964 0.99
250_F 253_A 1.943 0.99
272_C 333_A 1.936 0.99
142_S 145_G 1.814 0.99
152_G 184_V 1.74 0.98
176_R 306_P 1.738 0.98
178_V 182_V 1.68 0.98
65_A 68_D 1.636 0.97
326_W 330_A 1.634 0.97
84_G 88_G 1.598 0.97
183_M 244_A 1.586 0.97
58_A 61_N 1.551 0.96
182_V 338_I 1.481 0.94
285_V 298_A 1.474 0.94
278_T 281_E 1.433 0.93
103_T 117_L 1.431 0.93
112_T 148_A 1.414 0.92
262_M 265_V 1.389 0.91
158_P 320_F 1.386 0.91
266_A 338_I 1.367 0.91
194_W 327_L 1.366 0.91
162_V 166_F 1.365 0.90
252_H 256_A 1.363 0.90
262_M 266_A 1.354 0.90
172_F 295_T 1.351 0.90
257_V 263_W 1.349 0.90
168_L 235_Y 1.342 0.89
113_L 174_A 1.34 0.89
148_A 152_G 1.325 0.89
205_V 213_Q 1.305 0.88
78_W 229_W 1.304 0.88
190_L 341_G 1.299 0.87
116_T 185_L 1.29 0.87
176_R 312_S 1.289 0.87
82_V 212_A 1.287 0.87
119_S 152_G 1.279 0.86
152_G 183_M 1.278 0.86
174_A 178_V 1.266 0.85
330_A 338_I 1.265 0.85
104_L 111_G 1.263 0.85
84_G 306_P 1.258 0.85
91_I 341_G 1.258 0.85
77_V 153_N 1.257 0.85
175_I 299_L 1.255 0.85
277_P 301_L 1.251 0.85
261_L 265_V 1.247 0.84
60_A 63_W 1.237 0.84
242_L 245_A 1.231 0.83
181_L 303_M 1.231 0.83
118_F 287_T 1.231 0.83
228_F 307_A 1.229 0.83
201_T 317_R 1.224 0.83
73_Y 76_A 1.224 0.83
61_N 64_Q 1.221 0.83
80_A 123_M 1.22 0.82
253_A 293_M 1.215 0.82
150_W 239_V 1.212 0.82
126_T 311_P 1.212 0.82
64_Q 71_M 1.21 0.82
299_L 310_L 1.205 0.81
218_S 334_V 1.194 0.81
117_L 334_V 1.194 0.81
102_R 217_F 1.19 0.80
289_M 298_A 1.19 0.80
126_T 275_V 1.188 0.80
234_V 238_A 1.186 0.80
102_R 323_K 1.186 0.80
126_T 309_S 1.185 0.80
124_M 155_V 1.185 0.80
215_G 218_S 1.181 0.80
323_K 327_L 1.17 0.79
189_T 193_K 1.163 0.78
144_G 192_Q 1.154 0.77
77_V 89_S 1.147 0.77
151_M 332_V 1.147 0.77
275_V 309_S 1.143 0.76
164_M 176_R 1.141 0.76
196_R 327_L 1.13 0.75
336_G 339_V 1.129 0.75
161_L 177_L 1.129 0.75
253_A 257_V 1.121 0.74
83_L 149_F 1.117 0.74
283_P 309_S 1.116 0.74
81_A 85_V 1.114 0.74
164_M 280_A 1.113 0.74
185_L 236_I 1.111 0.73
207_I 211_E 1.106 0.73
239_V 243_G 1.104 0.73
101_L 333_A 1.104 0.73
119_S 149_F 1.103 0.73
149_F 153_N 1.103 0.73
126_T 283_P 1.102 0.73
200_Q 261_L 1.102 0.73
204_P 289_M 1.1 0.72
167_V 278_T 1.096 0.72
264_V 300_A 1.092 0.72
169_G 283_P 1.092 0.72
310_L 314_I 1.087 0.71
281_E 309_S 1.085 0.71
214_G 222_R 1.078 0.70
127_C 154_P 1.075 0.70
109_F 113_L 1.072 0.70
149_F 251_P 1.072 0.70
210_P 338_I 1.067 0.69
245_A 249_L 1.067 0.69
118_F 141_V 1.064 0.69
111_G 316_L 1.064 0.69
64_Q 67_L 1.062 0.69
118_F 316_L 1.06 0.68
304_T 336_G 1.059 0.68
283_P 292_G 1.058 0.68
244_A 264_V 1.058 0.68
278_T 282_I 1.056 0.68
130_A 315_M 1.054 0.68
97_R 100_L 1.048 0.67
109_F 117_L 1.046 0.67
102_R 342_L 1.046 0.67
281_E 284_I 1.045 0.67
180_G 280_A 1.042 0.66
83_L 260_S 1.042 0.66
302_L 308_V 1.041 0.66
188_A 328_T 1.034 0.66
304_T 342_L 1.034 0.66
292_G 340_G 1.032 0.65
113_L 178_V 1.032 0.65
129_A 315_M 1.029 0.65
335_S 339_V 1.029 0.65
105_G 167_V 1.028 0.65
85_V 203_A 1.027 0.65
214_G 221_G 1.026 0.65
90_L 223_A 1.025 0.65
323_K 326_W 1.024 0.64
165_G 173_A 1.018 0.64
286_Q 290_L 1.018 0.64
61_N 68_D 1.013 0.63
218_S 323_K 1.013 0.63
159_A 167_V 1.011 0.63
247_V 257_V 1.01 0.63
137_R 142_S 1.01 0.63
169_G 251_P 1.009 0.63
304_T 308_V 1.008 0.63
83_L 87_L 1.007 0.63
116_T 296_A 1.007 0.63
216_F 220_W 1.006 0.62
73_Y 77_V 1.006 0.62
287_T 294_G 1.005 0.62
91_I 323_K 1 0.62
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
1pw4A10.942222.50.967Contact Map0.195
3o7qA10.898820.20.968Contact Map0.153
2cfqA10.933516.30.969Contact Map0.18
4apsA20.930612.90.971Contact Map0.162
2xutA30.9566110.971Contact Map0.131
3tx3A20.40757.80.973Contact Map0.394
3giaA10.56076.20.974Contact Map0.324
2fyuK10.09254.90.976Contact Map0.006
4j05A20.56364.50.976Contact Map0.356
2i68A20.37863.60.977Contact Map0.002

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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