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OPENSEQ.org
NUOCD - NADH-quinone oxidoreductase subunit C/D
UniProt: P33599 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG12084
Length: 596 (579)
Sequences: 437
Seq/Len: 0.75
NUOCD
Paralog alert: 0.56 [within 20: 0.01] - ratio of genomes with paralogs
Cluster includes: HYCE HYFG NUOCD
GREMLIN Results:
  • No predictions exist for P33599
  • Not enough sequences to perform GREMLIN analysis on (0.75 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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