OPENSEQ.org - YFIL - ECOLI GREMLIN

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YFIL - Uncharacterized protein YfiL

UniProt:	P11289	Sequence MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISGSAIKDDDAFSDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQLHEVWQKGADENASTIRLN	Download Alignment We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene:	EG12446
Length:	121 (117)
Sequences:	147
Seq/Len:	1.26

YFIL
Paralog alert: 0.05 [within 20: 0.01] - ratio of genomes with paralogs

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Scaled Score	Prob
41_A	93_S	3.651	1.00
90_F	103_L	2.736	1.00
92_A	103_L	2.172	0.99
67_Y	71_Q	2.147	0.98
63_Y	81_Y	2.07	0.98
84_G	110_G	1.964	0.97
80_T	103_L	1.688	0.91
20_D	56_S	1.611	0.88
5_F	10_L	1.607	0.88
59_D	62_L	1.502	0.83
8_P	65_K	1.461	0.80
47_I	64_L	1.385	0.75
41_A	71_Q	1.334	0.71
58_A	86_S	1.326	0.70
54_S	69_E	1.321	0.70
28_L	41_A	1.32	0.70
81_Y	110_G	1.275	0.66
68_A	71_Q	1.26	0.65
47_I	63_Y	1.23	0.62
80_T	111_A	1.224	0.61
28_L	97_V	1.21	0.60
5_F	65_K	1.198	0.59
8_P	52_A	1.171	0.56
41_A	50_D	1.158	0.55
46_A	77_T	1.156	0.55
8_P	11_A	1.145	0.54
32_D	103_L	1.135	0.53
31_T	67_Y	1.124	0.52
19_I	43_S	1.123	0.51
16_G	114_N	1.119	0.51
74_T	93_S	1.118	0.51
3_K	10_L	1.112	0.50
40_D	58_A	1.107	0.50
80_T	106_V	1.099	0.49
53_F	59_D	1.092	0.48
45_S	49_D	1.087	0.48
56_S	95_N	1.08	0.47
26_P	64_L	1.074	0.47
81_Y	115_A	1.071	0.46
9_L	114_N	1.068	0.46
100_A	103_L	1.063	0.46
63_Y	116_S	1.057	0.45
106_V	110_G	1.055	0.45
83_R	107_W	1.054	0.45
2_M	13_L	1.051	0.44
84_G	90_F	1.05	0.44
5_F	11_A	1.049	0.44
48_K	96_N	1.046	0.44
18_Q	29_T	1.045	0.44
55_D	103_L	1.019	0.41
11_A	14_V	1.018	0.41
7_A	29_T	1.015	0.41
90_F	104_H	1.012	0.41
43_S	108_Q	1.01	0.40
116_S	121_N	1.007	0.40

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling

HHsearch Results:

PDB	Chains	Cov	P(%)	HHΔ		Acc
3zbiC	14	0.3884	88.3	0.869	Contact Map	0
4bolA	2	0.7934	20.9	0.921	Contact Map	0.197
4kysA	2	0.9669	9.4	0.933	Contact Map	0.051
3v22V	1	0.4463	9.3	0.933	Contact Map	0.032
2f2fC	2	0.9256	9.1	0.933	Contact Map	0
3ombA	1	0.9835	9	0.933	Contact Map	0.072
4bgoA	2	0.8678	8.4	0.934	Contact Map	0.142
3uorA	2	0.9339	6.8	0.937	Contact Map	0.01
3k6vA	1	0.8843	6	0.938	Contact Map	0.068
4fajA	1	0.8512	5.8	0.939	Contact Map	0.17

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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