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OPENSEQ.org

BARA - Signal transduction histidine-protein kinase BarA
UniProt: P0AEC5 Sequence
Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG11367
Length: 918 (917)
Sequences: 333
Seq/Len: 0.36

BARA
Paralog alert: 0.06 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ARCB BARA
GREMLIN Results:
  • No predictions exist for P0AEC5
  • Not enough sequences to perform GREMLIN analysis on (0.36 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
4i5sA20.39221000.794Contact Map
4e01A10.39221000.826Contact Map
2btzA10.37691000.826Contact Map
2c2aA10.27341000.833Contact Map
2q8gA10.38671000.834Contact Map
4gczA20.38241000.836Contact Map
2e0aA20.37911000.836Contact Map
3jz3A20.23971000.837Contact Map
4ew8A20.28871000.839Contact Map
1y8oA10.41291000.841Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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