May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
HYPB - Hydrogenase isoenzymes nickel incorporation protein HypB
UniProt: P0AAN3 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG10484
Length: 290 (282)
Sequences: 154
Seq/Len: 0.55
HYPB
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:
  • No predictions exist for P0AAN3
  • Not enough sequences to perform GREMLIN analysis on (0.55 < 1)
HHsearch Results: GREMLIN results overlayed on top 10 PDB hits:
Legend: Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on 10 HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov P(%) HHΔ   Acc
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
Page generated in 0.4215 seconds.