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OPENSEQ.org
YCGN - UPF0260 protein YcgN
UniProt: P0A8L5 Sequence
 Download Alignment
We filter this alignment to remove sites that have > 75% gaps before running GREMLIN.
EcoGene: EG13895
Length: 153 (144)
Sequences: 388
Seq/Len: 2.69
YCGN
Paralog alert: 0.00 [within 20: 0.00] - ratio of genomes with paralogs
GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Scaled Score Prob
15_K 24_E 4.142 1.00
67_N 70_R 3.398 1.00
41_M 46_D 3.112 1.00
122_H 129_R 2.376 1.00
108_P 115_T 2.347 1.00
13_Q 106_D 2.213 1.00
52_N 144_H 2.081 1.00
20_M 101_L 1.986 0.99
112_P 118_K 1.952 0.99
115_T 121_M 1.946 0.99
67_N 74_F 1.888 0.99
115_T 120_A 1.861 0.99
33_G 72_F 1.859 0.99
10_P 13_Q 1.836 0.99
100_L 105_K 1.831 0.99
120_A 124_E 1.816 0.99
95_T 100_L 1.788 0.99
63_C 129_R 1.742 0.98
54_A 58_L 1.73 0.98
16_T 19_E 1.715 0.98
16_T 24_E 1.664 0.98
100_L 106_D 1.622 0.97
70_R 73_E 1.612 0.97
28_L 97_A 1.609 0.97
27_S 106_D 1.575 0.96
60_I 132_A 1.478 0.94
122_H 127_S 1.475 0.94
56_R 75_E 1.443 0.93
138_V 141_W 1.435 0.93
63_C 122_H 1.433 0.93
135_E 138_V 1.432 0.93
118_K 121_M 1.353 0.90
89_F 146_L 1.309 0.88
109_A 120_A 1.29 0.87
57_Q 130_H 1.259 0.85
16_T 101_L 1.248 0.84
120_A 123_G 1.246 0.84
64_Q 118_K 1.229 0.83
22_D 80_K 1.22 0.82
34_Q 128_V 1.214 0.82
102_A 132_A 1.21 0.81
34_Q 126_I 1.202 0.81
82_T 88_T 1.197 0.80
145_I 149_P 1.195 0.80
18_D 87_P 1.182 0.79
86_L 89_F 1.18 0.79
34_Q 94_M 1.158 0.77
53_V 81_L 1.134 0.75
10_P 114_L 1.102 0.72
58_L 128_V 1.091 0.71
15_K 20_M 1.071 0.69
10_P 27_S 1.067 0.69
101_L 106_D 1.06 0.68
38_H 140_D 1.058 0.68
77_D 94_M 1.052 0.67
72_F 92_L 1.052 0.67
101_L 115_T 1.051 0.67
94_M 149_P 1.046 0.66
48_I 90_E 1.034 0.65
99_R 103_E 1.025 0.64
15_K 19_E 1.012 0.63
13_Q 114_L 1 0.61
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Scaled Score = (raw_score/average(raw_scores)) > 1 are listed. For all 3L/2 predictions, click on one of the links below.
HHsearch Results:
PDB Chains Cov P(%) HHΔ   Acc
2bs2B20.35295.70.97Contact Map0.15
3zfsB10.516330.973Contact Map0
2zvsA30.52292.80.974Contact Map0.022
3tr3A20.1832.50.974Contact Map0
1pqwA20.53592.30.975Contact Map0.176
2ixoA20.47062.30.975Contact Map0.216
1ujsA10.19612.20.975Contact Map0.782
2licA10.11112.10.976Contact Map0
2kihA40.25491.80.977Contact Map0.327
4haeA10.21571.70.977Contact Map0
Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.
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