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HsapCycD1_MRK helix v HsapRB1 helix jackhammer lower iteration count

Genes: A B A+B
Length: 68 28 96
Sequences: 7 20 1
Seq/Len: 0.1 0.71 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show Jackhmmer results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.08 0.04 0.01
2 0.08 0.04 0.01
5 0.08 0.04 0.01
10 0.08 0.04 0.01
20 0.08 0.04 0.01
100 0.08 0.04 0.01
0.08 0.04 0.01
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
8277 0.01 HsapCycD1_MRK helix v HsapRB1 helix jackhammer lower iteration count Δgene:(1, 20) A:(1E-04, 8) B:(1E-04, 8) msa: Jackhmmer (r132) Killed - Shared
8275 0.01 HsapCycD1_MRK helix v HsapRB1 helix jackhammer lower iteration count Δgene:(1, 20) A:(1E-10, 2) B:(1E-10, 2) msa: Jackhmmer (r132) Killed - Shared
8246 0.01 HsapCycD1_MRK v HsapRB_helix Δgene:(1, 20) A:(1E-10, 8) B:(1E-10, 8) msa: Jackhmmer (r132) Killed - Shared

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