OPENSEQ.org
A(ACP)B(ISD11)

Genes: A B A+B
Length: 88 97 185
Sequences: 3057 335 1
Seq/Len: 34.74 3.45 0.01
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.05 0.01 0.01
2 0.05 0.01 0.01
5 0.06 0.01 0.01
10 0.06 0.01 0.01
20 0.06 0.01 0.01
100 0.06 0.01 0.03
0.13 0.01 0.15
Paired alignment generation
None of the genomes have hits within 20 Δgene.
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.01 < 0.6).

ID Seq/Len Name Options I_Prob Status
8219 0.02 A(ACP)B(ISD11) Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: Jackhmmer (r132) Killed - Shared
8218 0.01 A(ACP)B(ISD11) Δgene:(1, 10) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared
8217 0.01 A(ACP)B(ISD11) Δgene:(1, 20) A:(1E-20, 8) B:(1E-20, 8) msa: HHblits (2015_06) Killed - Shared

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