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pred_2SNI_l_u_IpdbIfas_2SNI_r_u_ApdbAfastable_PRtxt

Genes: A B A+B
Length: 65 274 317
Sequences: 434 12743 11
Seq/Len: 6.68 46.51 0.03
MirrorTree (Pazo et al. 2001) 0.20
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.33 0.06 0.02
2 0.38 0.07 0.03
5 0.41 0.08 0.03
10 0.42 0.09 0.03
20 0.42 0.10 0.03
100 0.43 0.13 0.06
0.44 0.20 0.23
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (0.42 > 0.4) of paralogs.

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