OPENSEQ.org
pred_1K4C_l_u_ApdbAfas_1K4C_r_u_BpdbBfastable_PRtxt

Genes: A B A+B
Length: 97 212 296
Sequences: 2251 951 9
Seq/Len: 23.21 4.49 0.03
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.03 0.18 0.00
2 0.03 0.18 0.00
5 0.03 0.19 0.01
10 0.03 0.19 0.03
20 0.04 0.19 0.03
100 0.04 0.19 0.04
0.11 0.19 0.05
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0.03 < 0.6).

Page generated in 0.0391 seconds.