OPENSEQ.org
NirN_NirS

Genes: A B A+B
Length: 568 493 1061
Sequences: 209 302 1
Seq/Len: 0.37 0.61 0
Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.

[Show HHblits results] - Maybe useful in deciding what regions to trim.

Δgene Ratio of paralogs Joined
A B Seq/Len
1 0.04 0.03 0.00
2 0.05 0.04 0.00
5 0.08 0.07 0.00
10 0.48 0.37 0.00
20 0.53 0.40 0.00
100 0.53 0.41 0.00
0.55 0.44 0.00
Paired alignment generation
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
Sequence A E-value:
Iterations:
Sequence B E-value:
Iterations:
Δgene MSA
Figure 1: The effect of Δgene on ratio of paralogs in the genome for each gene, and the number of sequences in the resulting joined alignment. Figure 2: Distribution of Δgene across all genomes. Figure 3: Current parameters. You can use the form to adjust the parameters and resubmit the job!

GREMLIN results
  • ERROR: Not enough sequences to run GREMLIN analysis on (0 < 0.6).
WARNING: The input alignment may be corrupted!
  • For sequence A, there is a high ratio (0.53 > 0.4) of paralogs.

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