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OPENSEQ.org

L10 - S06
UniProt: Q8VVE3 - Q5SLP8
Length: 274
Sequences: 1286
Seq/Len: 4.80
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00F 2j01J 2j02F 2j03JContact Map
4kix4kix5 4kiyF 4kiz5 4kj0F 4kj15 4kj2F 4kj4FContact Map
4kj54kj55 4kj6F 4kj8F 4kj95 4kjaF 4kjcFContact Map
3i8f3i8gI 3i8hI 3i8iYContact Map
3sfs3sfsF 3sgfHContact Map
3d5a3d5aF 3d5bJ 3d5cF 3d5dJContact Map
3kiq3kiqf 3kirJ 3kisf 3kitJContact Map
3pys3pysF 3pytI 3pyuF 3pyvIContact Map
3pyn3pynF 3pyoI 3pyqF 3pyrIContact Map
3kiu3kiuf 3kiwJ 3kixf 3kiyJContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
93_L 30_L 0.98 0.02
116_I 46_R 0.93 0.01
13_L 55_D 0.85 0.01
75_Q 30_L 0.81 0.01
118_T 95_E 0.80 0.01
110_G 77_R 0.79 0.01
24_F 87_R 0.78 0.01
15_E 37_V 0.78 0.01
55_K 76_A 0.75 0.01
109_S 87_R 0.74 0.01
47_N 28_R 0.73 0.01
74_L 22_E 0.73 0.01
59_I 62_W 0.71 0.01
83_Y 89_M 0.71 0.01
13_L 52_I 0.69 0.01
36_E 86_R 0.69 0.01
63_L 54_K 0.68 0.01
58_L 35_A 0.67 0.01
132_D 23_K 0.67 0.01
7_V 15_D 0.66 0.01
12_T 60_F 0.65 0.01
74_L 7_N 0.65 0.01
13_L 46_R 0.65 0.01
124_A 45_L 0.65 0.01
87_V 57_Q 0.64 0.01
36_E 6_V 0.64 0.01
13_L 18_Q 0.63 0.01
89_A 58_G 0.63 0.01
149_L 58_G 0.62 0.01
5_R 24_E 0.62 0.01
120_K 68_P 0.61 0.01
17_L 62_W 0.61 0.01
171_K 1_M 0.60 0.01
6_N 83_D 0.60 0.01
130_T 51_P 0.60 0.01
172_A 53_A 0.60 0.01
119_A 92_K 0.60 0.01
34_A 86_R 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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