May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L10 - L25
UniProt: Q8VVE3 - Q5SHZ1
Length: 379
Sequences: 1227
Seq/Len: 3.49
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01JZ 2j03JZContact Map
4kix4kix5V 4kiz5V 4kj15V 4kj3VContact Map
4kj54kj55V 4kj7V 4kj95V 4kjbVContact Map
3i8f3i8fV 3i8iYVContact Map
3sfs3sgfHZContact Map
3d5a3d5bJZ 3d5dJZContact Map
3kiq3kirJZ 3kitJZContact Map
3pys3pytIV 3pyvIVContact Map
3pyn3pyoIV 3pyrIVContact Map
3kiu3kiwJZ 3kiyJZContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
147_A 155_L 0.96 0.01
15_E 39_V 0.89 0.01
136_A 135_E 0.87 0.01
48_G 108_P 0.87 0.01
122_V 178_E 0.86 0.01
55_K 147_G 0.86 0.01
83_Y 171_I 0.82 0.00
169_E 141_V 0.80 0.00
99_S 100_V 0.78 0.00
153_L 89_F 0.75 0.00
39_A 171_I 0.74 0.00
63_L 54_H 0.73 0.00
64_K 172_A 0.72 0.00
63_L 72_R 0.71 0.00
13_L 77_D 0.70 0.00
85_D 103_R 0.69 0.00
1_M 142_S 0.68 0.00
122_V 80_R 0.68 0.00
151_G 56_V 0.68 0.00
145_P 73_Q 0.67 0.00
144_A 27_V 0.67 0.00
39_A 5_L 0.67 0.00
3_N 79_R 0.67 0.00
127_E 15_P 0.66 0.00
17_L 62_P 0.66 0.00
35_K 175_V 0.66 0.00
96_F 17_A 0.66 0.00
168_A 24_L 0.65 0.00
56_N 147_G 0.64 0.00
80_V 45_D 0.63 0.00
92_T 132_N 0.63 0.00
3_N 48_F 0.63 0.00
132_D 30_N 0.61 0.00
108_K 55_H 0.61 0.00
56_N 134_P 0.61 0.00
138_L 82_R 0.61 0.00
1_M 150_L 0.61 0.00
172_A 5_L 0.61 0.00
52_F 73_Q 0.60 0.00
130_T 75_N 0.60 0.00
125_L 75_N 0.60 0.00
11_A 58_V 0.60 0.00
123_E 149_S 0.60 0.00
26_L 44_F 0.60 0.00
17_L 93_D 0.60 0.00
131_M 76_L 0.60 0.00
121_D 119_E 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.9083 seconds.