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OPENSEQ.org

L10 - L29
UniProt: Q8VVE3 - Q5SHP6
Length: 245
Sequences: 1233
Seq/Len: 5.29
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoGVContact Map
1vq81vq8GVContact Map
1vqp1vqpGVContact Map
1vqm1vqmGVContact Map
1vql1vqlGVContact Map
1vqk1vqkGVContact Map
1yhq1yhqGVContact Map
1s721s72GVContact Map
1vq91vq9GVContact Map
1vqn1vqnGVContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
6_N 54_K 0.81 0.00
24_F 29_K 0.76 0.00
78_S 28_K 0.73 0.00
30_Q 59_R 0.70 0.00
152_V 50_I 0.69 0.00
155_G 56_Q 0.68 0.00
67_G 11_E 0.67 0.00
37_T 30_R 0.64 0.00
122_V 8_K 0.62 0.00
49_A 53_L 0.62 0.00
52_F 17_S 0.61 0.00
50_R 54_K 0.60 0.00
78_S 46_Q 0.58 0.00
144_A 71_N 0.58 0.00
17_L 51_R 0.58 0.00
131_M 59_R 0.57 0.00
111_L 65_N 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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