May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L10 - S20
UniProt: Q8VVE3 - P80380
Length: 279
Sequences: 1352
Seq/Len: 5.32
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00T 2j01J 2j02T 2j03JContact Map
4kix4kix5 4kiyT 4kiz5 4kj0T 4kj15 4kj2T 4kj4TContact Map
4kj54kj55 4kj6T 4kj8T 4kj95 4kjaT 4kjcTContact Map
3i8f3i8gW 3i8hW 3i8iYContact Map
3sfs3sfsT 3sgfHContact Map
3d5a3d5aT 3d5bJ 3d5cT 3d5dJContact Map
3kiq3kiqt 3kirJ 3kist 3kitJContact Map
3pys3pysT 3pytI 3pyuT 3pyvIContact Map
3pyn3pynT 3pyoI 3pyqT 3pyrIContact Map
3kiu3kiut 3kiwJ 3kixt 3kiyJContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
129_P 79_R 0.97 0.02
83_Y 34_K 0.95 0.02
59_I 63_I 0.93 0.02
68_L 38_K 0.86 0.01
126_A 90_Q 0.81 0.01
95_Q 53_L 0.77 0.01
44_L 66_A 0.72 0.01
80_V 40_A 0.71 0.01
34_A 80_R 0.70 0.01
28_N 12_A 0.69 0.01
107_V 76_A 0.68 0.01
113_Q 50_E 0.68 0.01
32_L 63_I 0.67 0.01
129_P 83_R 0.66 0.01
99_S 54_K 0.64 0.01
84_E 50_E 0.64 0.01
110_G 66_A 0.64 0.01
46_Q 74_K 0.64 0.01
97_A 55_I 0.64 0.01
125_L 49_A 0.58 0.01
19_R 53_L 0.57 0.01
116_I 72_L 0.57 0.01
57_T 8_R 0.57 0.01
45_K 24_L 0.57 0.01
34_A 44_A 0.57 0.01
10_L 22_R 0.57 0.01
63_L 65_K 0.57 0.01
138_L 13_L 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.7467 seconds.