May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L07 - L24
UniProt: Q8VVE2 - Q5SHP9
Length: 235
Sequences: 1374
Seq/Len: 6.08
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j01LY 2j03LYContact Map
4kix4kix6U 4kizU 4kj1U 4kj3UContact Map
3i8f3i8fU 3i8iIJUContact Map
3sfs3sgfLKMJYContact Map
2zjq2zjq5RContact Map
4kd84kd9eY 4kdbeYContact Map
4kcy4kczeY 4kd2eYContact Map
3uoq3uosKLMJYContact Map
4kbt4kbueY 4kbweYContact Map
4kdg4kdheY 4kdkeYContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
9_K 24_V 0.60 0.00
16_T 66_P 0.59 0.00
29_E 64_E 0.57 0.00
98_P 101_K 0.53 0.00
63_I 86_R 0.52 0.00
94_E 48_A 0.51 0.00
52_A 90_L 0.51 0.00
114_K 57_Q 0.49 0.00
103_V 33_K 0.49 0.00
113_K 66_P 0.48 0.00
54_A 44_I 0.47 0.00
94_E 51_V 0.47 0.00
58_T 100_A 0.47 0.00
87_K 101_K 0.47 0.00
99_V 54_K 0.46 0.00
22_Q 88_K 0.46 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4012 seconds.