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OPENSEQ.org
L07 - S12
UniProt: Q8VVE2 - Q5SHN3
Length: 257
Sequences: 1034
Seq/Len: 4.14
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00L 2j01L 2j02L 2j03LContact Map
4kix4kix6 4kiyL 4kj0L 4kj2L 4kj4LContact Map
3i8f3i8gO 3i8hO 3i8iIJContact Map
3sfs3sfsL 3sgfLKMJContact Map
4kd84kd8L 4kd9e 4kdaL 4kdbeContact Map
4kcy4kcyL 4kcze 4kd0L 4kd2eContact Map
3uoq3uoqL 3uosKLMJContact Map
4kbt4kbtL 4kbue 4kbvL 4kbweContact Map
4kdg4kdgL 4kdhe 4kdjL 4kdkeContact Map
1yl31yl3IJ 1yl4OContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
79_R 64_T 1.00 0.02
27_L 82_I 0.89 0.01
104_S 26_G 0.85 0.01
8_I 79_V 0.83 0.01
110_E 22_P 0.73 0.01
113_K 109_D 0.72 0.01
27_L 38_R 0.70 0.01
18_L 70_E 0.70 0.01
60_F 116_K 0.69 0.01
54_A 81_L 0.69 0.01
5_I 113_S 0.68 0.01
20_L 2_P 0.68 0.01
12_L 105_A 0.68 0.01
24_I 105_A 0.68 0.01
77_E 105_A 0.67 0.01
63_I 58_T 0.66 0.01
10_E 53_A 0.63 0.01
27_L 79_V 0.62 0.01
67_A 70_E 0.62 0.01
3_L 36_V 0.61 0.01
44_A 22_P 0.61 0.01
94_E 104_A 0.61 0.01
94_E 79_V 0.60 0.01
2_A 5_N 0.60 0.01
17_V 5_N 0.60 0.01
12_L 113_S 0.59 0.01
23_L 96_H 0.59 0.01
72_L 97_I 0.59 0.01
106_Q 124_E 0.58 0.01
17_V 59_S 0.58 0.01
118_V 121_K 0.58 0.01
2_A 82_I 0.58 0.01
103_V 15_V 0.58 0.01
15_A 64_T 0.58 0.01
25_D 113_S 0.57 0.01
9_K 58_T 0.57 0.01
14_Q 15_V 0.57 0.01
87_K 29_F 0.57 0.01
110_E 58_T 0.56 0.01
50_A 8_V 0.56 0.01
81_I 43_K 0.56 0.01
15_A 104_A 0.56 0.00
73_E 109_D 0.56 0.00
91_D 108_K 0.56 0.00
38_P 65_A 0.55 0.00
15_A 65_A 0.55 0.00
83_G 33_V 0.54 0.00
62_V 74_L 0.54 0.00
28_K 49_L 0.54 0.00
16_T 4_I 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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