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OPENSEQ.org
L07 - S09
UniProt: Q8VVE2 - P80374
Length: 253
Sequences: 1353
Seq/Len: 5.39
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00I 2j01L 2j02I 2j03LContact Map
4kix4kix6 4kiyI 4kj0I 4kj2I 4kj4IContact Map
3i8f3i8gL 3i8hL 3i8iIJContact Map
3sfs3sfsI 3sgfLKMJContact Map
4kd84kd8I 4kd9e 4kdaI 4kdbeContact Map
4kcy4kcyI 4kcze 4kd0I 4kd2eContact Map
3uoq3uoqI 3uosKLMJContact Map
4kbt4kbtI 4kbue 4kbvI 4kbweContact Map
4kdg4kdgI 4kdhe 4kdjI 4kdkeContact Map
1yl31yl3IJ 1yl4LContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
38_P 18_F 0.81 0.00
1_M 118_K 0.76 0.00
23_L 125_Y 0.71 0.00
15_A 37_F 0.67 0.00
72_L 18_F 0.62 0.00
103_V 56_L 0.60 0.00
118_V 46_A 0.59 0.00
11_E 75_D 0.58 0.00
8_I 74_I 0.58 0.00
10_E 101_F 0.58 0.00
53_P 50_L 0.56 0.00
25_D 14_V 0.56 0.00
81_I 90_P 0.56 0.00
59_E 71_S 0.55 0.00
13_S 122_A 0.55 0.00
107_E 35_E 0.54 0.00
89_A 79_L 0.54 0.00
25_D 81_I 0.54 0.00
75_I 75_D 0.53 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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