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OPENSEQ.org
L07 - S04
UniProt: Q8VVE2 - P80373
Length: 334
Sequences: 1209
Seq/Len: 3.63
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00D 2j01L 2j02D 2j03LContact Map
4kix4kix6 4kiyD 4kj0D 4kj2D 4kj4DContact Map
3i8f3i8gG 3i8hG 3i8iIJContact Map
3sfs3sfsD 3sgfLKMJContact Map
4kd84kd8D 4kd9e 4kdaD 4kdbeContact Map
4kcy4kcyD 4kcze 4kd0D 4kd2eContact Map
3uoq3uoqD 3uosKLMJContact Map
4kbt4kbtD 4kbue 4kbvD 4kbweContact Map
4kdg4kdgD 4kdhe 4kdjD 4kdkeContact Map
1yl31yl3IJ 1yl4GContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
72_L 124_G 0.84 0.00
2_A 193_D 0.81 0.00
14_Q 79_F 0.68 0.00
113_K 170_V 0.67 0.00
51_A 180_G 0.67 0.00
5_I 53_D 0.66 0.00
56_E 174_L 0.66 0.00
102_G 141_R 0.65 0.00
88_E 186_L 0.65 0.00
29_E 56_V 0.63 0.00
121_V 65_R 0.63 0.00
111_I 138_Y 0.62 0.00
9_K 71_S 0.61 0.00
112_K 203_V 0.61 0.00
52_A 154_N 0.60 0.00
52_A 122_R 0.60 0.00
97_G 10_R 0.60 0.00
101_E 47_R 0.59 0.00
67_A 5_I 0.58 0.00
31_W 19_L 0.58 0.00
97_G 113_S 0.57 0.00
111_I 78_L 0.57 0.00
106_Q 110_F 0.57 0.00
50_A 39_P 0.56 0.00
91_D 56_V 0.56 0.00
61_D 162_L 0.56 0.00
106_Q 158_I 0.56 0.00
94_E 45_Q 0.56 0.00
8_I 34_E 0.56 0.00
10_E 199_N 0.55 0.00
121_V 85_K 0.55 0.00
74_V 92_V 0.55 0.00
19_E 42_Q 0.55 0.00
124_L 115_R 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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