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OPENSEQ.org

L11 - S05
UniProt: Q5SLP6 - Q5SHQ5
Length: 309
Sequences: 1254
Seq/Len: 4.22
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2j002j00E 2j01K 2j02E 2j03KContact Map
4juw4juwE 4juxKContact Map
4kix4kixI 4kiyE 4kizI 4kj0E 4kj1I 4kj2E 4kj3I 4kj4EContact Map
4kj54kj5I 4kj6E 4kj7I 4kj8E 4kj9I 4kjaE 4kjbI 4kjcEContact Map
4gd13r8sI 3r8tI 4gd1E 4gd2EContact Map
3f1e3f1eE 3f1fK 3f1gE 3f1hKContact Map
3i8f3i8gH 3i8hH 3i8iLContact Map
3ofo3ofoE 3ofpE 3ofqI 3ofrIContact Map
2x9r2x9rE 2x9sK 2x9tE 2x9uKContact Map
3i1m3i1mE 3i1nI 3i1oE 3i1pIContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
53_V 85_G 0.80 0.00
99_I 148_V 0.78 0.00
2_K 124_G 0.76 0.00
58_T 91_L 0.73 0.00
32_A 120_T 0.72 0.00
30_H 142_L 0.70 0.00
139_V 4_T 0.70 0.00
32_A 43_L 0.68 0.00
59_I 65_N 0.65 0.00
100_T 100_V 0.65 0.00
38_V 119_L 0.65 0.00
97_G 59_G 0.65 0.00
117_T 82_V 0.64 0.00
89_H 144_T 0.64 0.00
97_G 126_R 0.63 0.00
35_M 94_A 0.63 0.00
71_T 16_T 0.63 0.00
99_I 17_A 0.63 0.00
7_V 145_K 0.62 0.00
71_T 70_P 0.61 0.00
69_T 115_V 0.61 0.00
50_D 117_D 0.60 0.00
100_T 3_E 0.60 0.00
20_A 43_L 0.60 0.00
89_H 147_D 0.60 0.00
20_A 16_T 0.60 0.00
94_E 11_I 0.60 0.00
34_I 50_E 0.59 0.00
32_A 117_D 0.59 0.00
89_H 96_P 0.59 0.00
53_V 138_A 0.59 0.00
36_E 83_E 0.58 0.00
29_Q 20_Q 0.58 0.00
89_H 146_A 0.58 0.00
56_E 3_E 0.58 0.00
85_E 155_E 0.57 0.00
61_A 109_I 0.57 0.00
50_D 118_I 0.57 0.00
9_K 18_R 0.57 0.00
51_A 154_G 0.57 0.00
99_I 155_E 0.57 0.00
4_V 149_E 0.56 0.00
32_A 8_E 0.56 0.00
137_E 71_L 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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